Evidence map›Paper›PMID 38428406›Full record

ArticleAging2024

Machine learning-based endoplasmic reticulum-related diagnostic biomarker and immune microenvironment landscape for osteoarthritis.

Tingting Liu, Xiaomao Li, Mu Pang, Lifen Wang, Ye Li, Xizhe Sun

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Tingting LiuResearch Center for Drug Safety Evaluation of Hainan, Hainan Medical University, Haikou, Hainan 571199, China.
Xiaomao LiJiangsu Food and Pharmaceutical Science College, Huaian, Jiangsu 223023, China.
Mu PangThe Fourth Clinical Medical College of Guangzhou University of Chinese Medicine (Shenzhen Traditional Chinese Medicine Hospital), Shenzhen, Guangdong 518000, China.
Lifen WangResearch Center for Drug Safety Evaluation of Hainan, Hainan Medical University, Haikou, Hainan 571199, China.
Ye LiChongqing Three Gorges Medical College, Chongqing 404120, China.
Xizhe SunResearch Center for Drug Safety Evaluation of Hainan, Hainan Medical University, Haikou, Hainan 571199, China.
Hainan Medical University · CNChongqing Three Gorges University · CNGuangzhou University of Chinese Medicine · CNJiangsu Food and Pharmaceutical Science College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOsteoarthritis (OA) is the most common degenerative joint disease worldwide. Further improving the current limited understanding of osteoarthritis has positive clinical value.

methodsOA samples were collected from GEO database and endoplasmic reticulum related genes (ERRGs) were identified. The WGCNA network was further built to identify the crucial gene module. Based on the expression profiles of characteristic ERRGs, LASSO algorithm was used to select key factors according to the minimum λ value. Random forest (RF) algorithm was used to calculate the importance of ERRGs. Subsequently, overlapping genes based on LASSO and RF algorithms were identified as ERRGs-related diagnostic biomarkers. In addition, OA specimens were also collected and performed qRT-PCR quantitative analysis of selected ERRGs.

resultsWe identified four ERRGs associated with OA risk assessment through machine learning methods, and verified the abnormal expressions of these screened markers in OA patients through

conclusionsOur results provide new evidence for the role of ER stress in the OA progression, as well as new markers and potential intervention targets for OA.

Indexed as

AlgorithmsOsteoarthritisBiomarkersEndoplasmic ReticulumHumansMachine LearningBiomarkersdiagnostic biomarkerendoplasmic reticulumimmune microenvironmentmachine learningosteoarthritis

Identifiers

PMID38428406
PMCPMC10968715
OpenAlexW4392241680

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.