Evidence map›Paper›PMID 38431663›Full record

ArticleNature communications2024

Transmission and dynamics of mother-infant gut viruses during pregnancy and early life.

Sanzhima Garmaeva, Trishla Sinha, Anastasia Gulyaeva, Nataliia Kuzub, Johanne E Spreckels, Sergio Andreu-Sánchez, Ranko Gacesa, Arnau Vich Vila, Siobhan Brushett, Marloes Kruk and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Gut virome dynamics: from commensal to critical player in health and disease.Nature reviews. Gastroenterology & hepatology · 2026
    Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Human microbiome acquisition and transmission.Nature reviews. Microbiology · 2025
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Sanzhima Garmaeva *Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-0429-833X
Trishla Sinha *Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-0992-7983
Anastasia GulyaevaDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-3587-3587
Nataliia KuzubDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Johanne E SpreckelsDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-8711-1736
Sergio Andreu-SánchezDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-3503-9971
Ranko GacesaDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-2119-0539
Arnau Vich VilaDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-4691-5583
Siobhan BrushettDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-5445-2972
Marloes KrukDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Lifelines NEXT cohort study
Jackie DekensDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Jan SikkemaUniversity Medical Center Groningen, Center for Development and Innovation, Groningen, Netherlands.
Folkert KuipersDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-2518-737X
Andrey N ShkoporovAPC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0002-5547-8672
Colin HillAPC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0002-8527-1445
Sicco ScherjonDepartment of Obstetrics and Gynecology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Cisca WijmengaDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-5635-1614
Jingyuan FuDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0001-5578-1236
Alexander KurilshikovDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-2541-5627
Alexandra ZhernakovaDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands. a.zhernakova@umcg.nl.ORCID 0000-0002-4574-0841

Funding

Wellcome TrustWellcome Trust 220646/Z/20/Z
6 · The paper itself

Abstract

Early development of the gut ecosystem is crucial for lifelong health. While infant gut bacterial communities have been studied extensively, the infant gut virome remains under-explored. To study the development of the infant gut virome over time and the factors that shape it, we longitudinally assess the composition of gut viruses and their bacterial hosts in 30 women during and after pregnancy and in their 32 infants during their first year of life. Using shotgun metagenomic sequencing applied to dsDNA extracted from Virus-Like Particles (VLPs) and bacteria, we generate 205 VLP metaviromes and 322 total metagenomes. With this data, we show that while the maternal gut virome composition remains stable during late pregnancy and after birth, the infant gut virome is dynamic in the first year of life. Notably, infant gut viromes contain a higher abundance of active temperate phages compared to maternal gut viromes, which decreases over the first year of life. Moreover, we show that the feeding mode and place of delivery influence the gut virome composition of infants. Lastly, we provide evidence of co-transmission of viral and bacterial strains from mothers to infants, demonstrating that infants acquire some of their virome from their mother's gut.

Indexed as

BacteriophagesGastrointestinal MicrobiomeMicrobiotaVirusesBacteriaFemaleHumansInfantMothersPregnancy

Identifiers

PMID38431663
PMCPMC10908809

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.