Evidence map›Paper›PMID 38438913›Full record

ArticleJournal of biomedical semantics2024

Enriching the FIDEO ontology with food-drug interactions from online knowledge sources.

Rabia Azzi, Georgeta Bordea, Romain Griffier, Jean Noël Nikiema, Fleur Mougin

Abstract read
In one paragraph

Article in Journal of biomedical semantics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Predicting Natural Product-Drug Interactions with Knowledge Graph Embeddings.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rabia Azzi *Univ. Bordeaux, Inserm, BPH, U1219, F-33000, Bordeaux, France.
Georgeta Bordea *Univ. Bordeaux, Inserm, BPH, U1219, F-33000, Bordeaux, France.
Romain GriffierUniv. Bordeaux, Inserm, BPH, U1219, F-33000, Bordeaux, France.
Jean Noël NikiemaDepartment of Management, Evaluation and Health Policy, School of Public Health, Université de Montréal, Québec, Canada.
Fleur MouginUniv. Bordeaux, Inserm, BPH, U1219, F-33000, Bordeaux, France. fleur.mougin@u-bordeaux.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increasing number of articles on adverse interactions that may occur when specific foods are consumed with certain drugs makes it difficult to keep up with the latest findings. Conflicting information is available in the scientific literature and specialized knowledge bases because interactions are described in an unstructured or semi-structured format. The FIDEO ontology aims to integrate and represent information about food-drug interactions in a structured way. This article reports on the new version of this ontology in which more than 1700 interactions are integrated from two online resources: DrugBank and Hedrine. These food-drug interactions have been represented in FIDEO in the form of precompiled concepts, each of which specifies both the food and the drug involved. Additionally, competency questions that can be answered are reviewed, and avenues for further enrichment are discussed.

Indexed as

Food-Drug InteractionsKnowledge BasesAdverse drug effectsBiomedical ontologyFAIR principlesFood-drug interactions

Identifiers

PMID38438913
PMCPMC10913206

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.