Evidence map›Paper›PMID 38446458›Full record

ArticleIUCrJ2024

Structural dissection of two redox proteins from the shipworm symbiont Teredinibacter turnerae.

Badri S Rajagopal, Nick Yates, Jake Smith, Alessandro Paradisi, Catherine Tétard-Jones, William G T Willats, Susan Marcus, J Paul Knox, Mohd Firdaus-Raih, Bernard Henrissat and 4 more

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Production of High-Value Antibiotics byACS sustainable chemistry & engineering · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Badri S RajagopalAstbury Centre for Structural Molecular Biology and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.
Nick YatesDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.
Jake SmithDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.
Alessandro ParadisiDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.
Catherine Tétard-JonesSchool of Natural and Environmental Science, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom.
William G T WillatsSchool of Natural and Environmental Science, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom.
Susan MarcusCentre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.
J Paul KnoxCentre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.ORCID 0000-0002-9231-6891
Mohd Firdaus-RaihDepartment of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Malaysia.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille Université, Marseille, France.
Gideon J DaviesDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0002-7343-776X
Paul H WaltonDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0002-1152-1480
Alison ParkinDepartment of Chemistry, University of York, York YO10 5DD, United Kingdom.
Glyn R HemsworthAstbury Centre for Structural Molecular Biology and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.ORCID 0000-0002-8226-1380
University of York · GBUniversity of Leeds · GBNewcastle University · GBCentre National de la Recherche Scientifique · FRNational University of Malaysia · MY

Funding

Biotechnology and Biological Sciences Research Council BB/M012573/1Biotechnology and Biological Sciences Research Council BB/N019970/1Biotechnology and Biological Sciences Research Council BB/S009787/1
6 · The paper itself

Abstract

The discovery of lytic polysaccharide monooxygenases (LPMOs), a family of copper-dependent enzymes that play a major role in polysaccharide degradation, has revealed the importance of oxidoreductases in the biological utilization of biomass. In fungi, a range of redox proteins have been implicated as working in harness with LPMOs to bring about polysaccharide oxidation. In bacteria, less is known about the interplay between redox proteins and LPMOs, or how the interaction between the two contributes to polysaccharide degradation. We therefore set out to characterize two previously unstudied proteins from the shipworm symbiont Teredinibacter turnerae that were initially identified by the presence of carbohydrate binding domains appended to uncharacterized domains with probable redox functions. Here, X-ray crystal structures of several domains from these proteins are presented together with initial efforts to characterize their functions. The analysis suggests that the target proteins are unlikely to function as LPMO electron donors, raising new questions as to the potential redox functions that these large extracellular multi-haem-containing c-type cytochromes may perform in these bacteria.

Indexed as

GammaproteobacteriaMixed Function OxygenasesOxidation-ReductionPolysaccharidesMixed Function OxygenasesPolysaccharidescellulosec-type cytochromeselectron transferslytic polysaccharide monooxygenasesprotein structuresredox proteinsshipwormsTeredinibacter turneraeX-ray crystallography

Identifiers

PMID38446458
PMCPMC10916295
OpenAlexW4392529606

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.