ArticleNature2024
Universal recording of immune cell interactions in vivo.
Open access · greenAbstract read
In one paragraph
Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
19.9field-weighted citation impact, top 1% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
80 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.
- Opportunities and challenges of proximity labeling for microbe-host cell interactions in tumor microenvironment.Frontiers in cellular and infection microbiology · 2025Pooled it
- Barrier immune memory is programmed by intestinal epithelial cell presentation of cytosol-delivered bacterial antigens.Nature immunology · 2026Article
- Resolving cell-cell interaction networks and their molecular logic in complex tissues.Nature methods · 2026Article
- Multiomic proximity labeling in vivo by D-amino-acid-activated peroxidase reaction.Nature chemical biology · 2026Article
- Spatiotemporal control of STING activation and saRNA delivery decouples humoral and cellular immunity.bioRxiv : the preprint server for biology · 2026Article
- Antigen presentation by CD40Nature · 2026Article
- Mapping and engineering the human cell-cell interactome.Nature biotechnology · 2026Review
- Leveraging Single-Cell and Spatial Transcriptomics in Gut Nutrition and Mucosal Immunology.The Journal of nutrition · 2026Article
- Colorectal cancers with distinct metastatic potential trigger divergent early T cell responses.bioRxiv : the preprint server for biology · 2026Article
- ILC2s regulate a fibroblast progenitor niche in the pancreas.Science (New York, N.Y.) · 2026Article
- Fate induction through asymmetric T cell division is modulated by chimeric antigen receptor costimulatory domains.Nature immunology · 2026Article
- CD300ld on pathologically activated neutrophils promotes tumor immune suppression by binding phosphatidylserine on CD8Nature cancer · 2026Article
- Eosinophil-epithelial interactions mediate protective intestinal remodeling during food allergy.bioRxiv : the preprint server for biology · 2026Article
- Glial cells in chronic inflammation: diversity, dysfunction and therapeutic targeting.Nature reviews. Immunology · 2026Review
- How crosstalk at the immune synapse shapes T cell and dendritic cell biology.Nature reviews. Immunology · 2026Review
- PRECISE-seq reveals disease-relevant TCR repertoires with phenotypic plasticity.The Journal of experimental medicine · 2026Article
- Article
- CLEC2B-KLRB1 axis acts as an immune checkpoint, governing the exhaustion of CD8Journal for immunotherapy of cancer · 2026Article
- CCR7 orchestrates the malignant progression of memory B cells in MYC-overexpressing lymphoma.Cell death and differentiation · 2026Article
- Spatial instruction of tissue immunity.ImmunoHorizons · 2026Review
20 more citing papers are in PubMed but not listed here.
Corrections and comments
- Update of
Authors and funding
18 authors at 6 institutions in 3 countries.
Sandra Nakandakari-HigaLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Sarah Walker *Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-3179-5569
Maria C C Canesso *Laboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Verena van der HeideMarc and Jennifer Lipschultz Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-3602-4405
Aleksey ChudnovskiyLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Dong-Yoon KimLaboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Johanne T JacobsenLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Roham ParsaLaboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Jana BilanovicLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-0143-9694
S Martina ParigiLaboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, NY, USA.
Karol FiedorczukLaboratory of Membrane Biology and Biophysics, The Rockefeller University, New York, NY, USA.
Elaine FuchsLaboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-0978-5137
Angelina M BilateLaboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Giulia PasqualLaboratory of Synthetic Immunology, Department of Surgery, Oncology and Gastroenterology, University of Padova, Padua, Italy.ORCID 0000-0002-1476-2669
Daniel MucidaLaboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-0000-0452
Alice O KamphorstMarc and Jennifer Lipschultz Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-9230-9501
Yuri PritykinLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. pritykin@princeton.edu.ORCID 0000-0001-6589-981X
Gabriel D VictoraLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA. victora@rockefeller.edu.ORCID 0000-0001-8807-348X
Rockefeller University · USHoward Hughes Medical Institute · USIcahn School of Medicine at Mount Sinai · USPrinceton University · USOslo University Hospital · NOUniversity of Padua · IT
Funding
GENE EXPRESSION AND DIFFERENTIATION IN HUMAN EPIDERMISR37AR027883 · NIAMS · UNIVERSITY OF CHICAGO · PI ELAINE FUCHS · 1994 to 2026
$13.3MQuantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9MSkin Stem Cells: Purification and CharacterizationR01AR050452 · NIAMS · ROCKEFELLER UNIVERSITY · PI ELAINE FUCHS · 2004 to 2026
$8.6MGENE EXPRESSION &DIFFERENTIATION IN HUMAN EPIDERMISR01AR027883 · NIAMS · UNIVERSITY OF CHICAGO · PI FUCHS, ELAINE · 1986 to 2022
$7.6MINTESTINAL REGULATION OF ThPOK EXPRESSION AND CD4 HELPER T CELL FUNCTIONR01DK093674 · NIDDK · ROCKEFELLER UNIVERSITY · PI Daniel S Mucida · 2013 to 2026
$7.0MQuantifying Cell-Cell Interactions in the Immune System by Trans-Synaptic LabelingDP1AI144248 · NIAID · ROCKEFELLER UNIVERSITY · PI VICTORA, GABRIEL D · 2018 to 2022
$5.9MDefining the role of T cell help in germinal centers by intercellular enzymatic labelingR01AI173086 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2022 to 2026
$4.0MDeterminants of differentiation and maintenance of PD-1+ CD8 T cellsR01AI153363 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KAMPHORST, ALICE OLIFFSON · 2021 to 2025
$3.3MRegulatory genomics of T cells in mouse and humanDP2AI171161 · NIAID · PRINCETON UNIVERSITY · PI Yury Pritykin · 2022 to 2026
$2.4MNHGRI NIH HHS T32 HG003284NIAID NIH HHS DP1 AI144248NIAID NIH HHS DP2 AI171161NIAID NIH HHS R01 AI153363NIAID NIH HHS R01 AI173086NIAMS NIH HHS R01 AR027883NIAMS NIH HHS R01 AR050452NIAMS NIH HHS R37 AR027883NIDDK NIH HHS R01 DK093674Wellcome Trust
Abstract
Immune cells rely on transient physical interactions with other immune and non-immune populations to regulate their function
Indexed as
B-LymphocytesCD8-Positive T-LymphocytesCell CommunicationDendritic CellsEpithelial CellsT Follicular Helper CellsT-Lymphocytes, RegulatoryGerminal CenterIntestinal MucosaLigandsLymphocytic ChoriomeningitisLymphocytic choriomeningitis virusOrgan SpecificitySingle-Cell Gene Expression AnalysisLigands
Identifiers
What Socratic holds
Textmetadata
LicenceTDM
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.