Evidence map›Paper›PMID 38468328›Full record

ArticlePlant methods2024

An efficient protocol for extracting thylakoid membranes and total leaf proteins from Posidonia oceanica and other polyphenol-rich plants.

Quentin Charras, Pascal Rey, Dorian Guillemain, Fabian Dourguin, Hugo Laganier, Sacha Peschoux, Roland Molinié, Marwa Ismaël, Stefano Caffarri, Catherine Rayon and 1 more

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Quentin CharrasCEA, CNRS, BIAM, LGBP Team, Aix-Marseille University, Marseille, France.
Pascal ReyCEA, CNRS, BIAM, P&E Team, Aix-Marseille University, Saint Paul-Lez-Durance, France.
Dorian GuillemainCNRS, IRD, IRSTEA, OSU Institut Pythéas, Aix-Marseille University, Marseille, France.
Fabian DourguinCEA, CNRS, BIAM, LGBP Team, Aix-Marseille University, Marseille, France.
Hugo LaganierCEA, CNRS, BIAM, LGBP Team, Aix-Marseille University, Marseille, France.
Sacha PeschouxUFR Informatique, mathématiques et mathématiques appliquées (IM2AG), Université Grenoble Alpes, Saint Martin d'Heres, France.
Roland MoliniéUMR INRAE 1158 Transfrontalière BioEcoAgro, BIOlogie des Plantes et Innovation (BIOPI), UPJV, Amiens, France.
Marwa IsmaëlUMR INRAE 1158 Transfrontalière BioEcoAgro, BIOlogie des Plantes et Innovation (BIOPI), UPJV, Amiens, France.
Stefano CaffarriCEA, CNRS, BIAM, LGBP Team, Aix-Marseille University, Marseille, France.
Catherine RayonUMR INRAE 1158 Transfrontalière BioEcoAgro, BIOlogie des Plantes et Innovation (BIOPI), UPJV, Amiens, France.
Colette JungasCEA, CNRS, BIAM, LGBP Team, Aix-Marseille University, Marseille, France. colette.JUNGAS@univ-amu.fr.
Centre National de la Recherche Scientifique · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRÉcole Polytechnique · FRUniversité Grenoble Alpes · FR

Funding

Swedish Foundation for Strategic Research SSF ARC19-0051
6 · The paper itself

Abstract

backgroundThe extraction of thylakoids is an essential step in studying the structure of photosynthetic complexes and several other aspects of the photosynthetic process in plants. Conventional protocols have been developed for selected land plants grown in controlled conditions. Plants accumulate defensive chemical compounds such as polyphenols to cope with environmental stresses. When the polyphenol levels are high, their oxidation and cross-linking properties prevent thylakoid extraction.

resultsIn this study, we developed a method to counteract the hindering effects of polyphenols by modifying the grinding buffer with the addition of both vitamin C (VitC) and polyethylene glycol (PEG4000). This protocol was first applied to the marine plant Posidonia oceanica and then extended to other plants synthesizing substantial amounts of polyphenols, such as Quercus pubescens (oak) and Vitis vinifera (grapevine). Native gel analysis showed that photosynthetic complexes (PSII, PSI, and LHCII) can be extracted from purified membranes and fractionated comparably to those extracted from the model plant Arabidopsis thaliana. Moreover, total protein extraction from frozen P. oceanica leaves was also efficiently carried out using a denaturing buffer containing PEG and VitC.

conclusionsOur work shows that the use of PEG and VitC significantly improves the isolation of native thylakoids, native photosynthetic complexes, and total proteins from plants containing high amounts of polyphenols and thus enables studies on photosynthesis in various plant species grown in natural conditions.

Indexed as

Ascorbic acid (vitamin C)Native-PAGEPhotosystemsPolyethylene glycolPolyphenolsSDS-PAGESeagrassesThylakoid membranesWild plants

Identifiers

PMID38468328
PMCPMC10929114
OpenAlexW4392662656

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.