Evidence mapPaperPMID 38470993Full record

ArticleDiabetes2024

Polygenic Risk for Type 2 Diabetes in African Americans.

Marguerite R Irvin, Tian Ge, Amit Patki, Vinodh Srinivasasainagendra, Nicole D Armstrong, Brittney Davis, Alana C Jones, Emma Perez, Lauren Stalbow, Matthew Lebo and 9 more

Abstract read
In one paragraph

Article in Diabetes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Marguerite R IrvinDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.ORCID 0000-0002-1442-2023
Tian GePsychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA.
Amit PatkiDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.
Vinodh SrinivasasainagendraDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.
Nicole D ArmstrongDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.
Brittney DavisDepartment of Neurology, School of Medicine, University of Alabama at Birmingham, Birmingham, AL.
Alana C JonesDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.
Emma PerezDepartment of Medicine, Brigham and Women's Hospital, Boston, MA.
Lauren StalbowThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY.
Matthew LeboStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA.
Eimear KennyInstitute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York, NY.
Ruth J F LoosThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY.
Maggie C Y NgVanderbilt Genetics Institute, Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN.ORCID 0000-0002-4133-2007
Jordan W SmollerPsychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA.
James B MeigsStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA.
Leslie A LangeDepartment of Epidemiology, University of Colorado School of Public Health, Aurora, CO.
Elizabeth W KarlsonDepartment of Medicine, Brigham and Women's Hospital, Boston, MA.
Nita A LimdiDepartment of Neurology, School of Medicine, University of Alabama at Birmingham, Birmingham, AL.
Hemant K TiwariDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL.

Funding

Interactive Data Portals and Robust Analytic Tools to Wrap PASC Cohorts (iDRAW) OTA-21-015AOT2HL161841 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Andrea S Foulkes, ELIZABETH W KARLSON · 2021 to 2021
$109.7M
VCID and Stroke in a Bi-racial National CohortU01NS041588 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MARY CUSHMAN, George Howard · 2002 to 2022
$25.4M
Clinical and Translational Science AwardUL1TR001873 · COLUMBIA UNIVERSITY HEALTH SCIENCES · 2025 to 2025
$10.0M
HYPERGEN: GENETICS OF LEFT VENTRICULAR HYPERTROPHYR01HL055673 · UNIVERSITY OF MINNESOTA TWIN CITIES · 1996 to 2004
$3.4M
TOPMed Omics of Type 2 Diabetes and Quantitative TraitsUM1DK078616 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · 2022 to 2025
$3.1M
Predictors of hemorrhage among patients on direct acting oral anticoagulantsR01HL092173 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NITA A LIMDI · 2022 to 2023
$1.5M
Genetics of African American type 2 diabetesR01DK066358 · WAKE FOREST UNIVERSITY HEALTH SCIENCES · 2003 to 2005
$1.3M
Development of Polygenic Risk Scores for Diabetes and Complications across the Life-Span in Populations of Multiple AncestriesU01HG011723 · BROAD INSTITUTE, INC. · 2025 to 2025
$949k
Single Cell and Immunoanalysis CoreP30AR069625 · BRIGHAM AND WOMEN'S HOSPITAL · 2025 to 2025
$883k
Integrating Genomic Risk Assessment for Disease Management in a Clinical PopulationU01HG011167 · UNIVERSITY OF ALABAMA AT BIRMINGHAM · 2025 to 2025
$860k
Cardiorenal Genomics for Risk Prediction in African Descent PopulationsR35HL155466 · UNIVERSITY OF ALABAMA AT BIRMINGHAM · 2025 to 2025
$847k
EHR-based Genome-Informed Risk Assessment and CommunicationU01HG008680 · COLUMBIA UNIVERSITY HEALTH SCIENCES · 2025 to 2025
$817k
NCATS NIH HHS UL1 TR001873NHGRI NIH HHS R01 HG012354NHGRI NIH HHS U01 HG006375NHGRI NIH HHS U01 HG006378NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG006380NHGRI NIH HHS U01 HG006382NHGRI NIH HHS U01 HG006385NHGRI NIH HHS U01 HG006388NHGRI NIH HHS U01 HG006389NHGRI NIH HHS U01 HG006828NHGRI NIH HHS U01 HG006830NHGRI NIH HHS U01 HG008680NHGRI NIH HHS U01 HG008685NHGRI NIH HHS U01 HG011167NHGRI NIH HHS U01HG011167NHGRI NIH HHS U01 HG011723NHLBI NIH HHS K24 HL133373NHLBI NIH HHS OT2 HL161841NHLBI NIH HHS R01 HL055673NHLBI NIH HHS R01 HL092173NHLBI NIH HHS R01 HL123782NHLBI NIH HHS R01 HL136666NHLBI NIH HHS R01 HL151855NHLBI NIH HHS R35 HL155466NIAMS NIH HHS P30 AR069625NIAMS NIH HHS P30 AR070253NIAMS NIH HHS R01 AR063759NIAMS NIH HHS R21 AR078339NIDDK NIH HHS K25 DK128563NIDDK NIH HHS R01 DK066358NIDDK NIH HHS R01 DK078616NIDDK NIH HHS U01 DK105556NIDDK NIH HHS UM1 DK078616NIH HHS OT2 OD026553NINDS NIH HHS U01 NS041588
6 · The paper itself

Abstract

African Americans (AAs) have been underrepresented in polygenic risk score (PRS) studies. Here, we integrated genome-wide data from multiple observational studies on type 2 diabetes (T2D), encompassing a total of 101,987 AAs, to train and optimize an AA-focused T2D PRS (PRSAA), using a Bayesian polygenic modeling method. We further tested the score in three independent studies with a total of 7,275 AAs and compared the PRSAA with other published scores. Results show that a 1-SD increase in the PRSAA was associated with 40-60% increase in the odds of T2D (odds ratio [OR] 1.60, 95% CI 1.37-1.88; OR 1.40, 95% CI 1.16-1.70; and OR 1.45, 95% CI 1.30-1.62) across three testing cohorts. These models captured 1.0-2.6% of the variance (R2) in T2D on the liability scale. The positive predictive values for three calculated score thresholds (the top 2%, 5%, and 10%) ranged from 14 to 35%. The PRSAA, in general, performed similarly to existing T2D PRS. The need remains for larger data sets to continue to evaluate the utility of within-ancestry scores in the AA population. ARTICLE HIGHLIGHTS:

Indexed as

Black or African AmericanDiabetes Mellitus, Type 2Genetic Predisposition to DiseaseGenome-Wide Association StudyMultifactorial InheritanceAdultAgedBayes TheoremFemaleHumansMaleMiddle AgedPolymorphism, Single NucleotideRisk Factors

Identifiers

PMID38470993
PMCPMC11109789

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.