Evidence map›Paper›PMID 38480883›Full record

ArticleNature2024

Rapid unleashing of macrophage efferocytic capacity via transcriptional pause release.

Turan Tufan, Gamze Comertpay, Ambra Villani, Geoffrey M Nelson, Marina Terekhova, Shannon Kelley, Pavel Zakharov, Rochelle M Ellison, Oleg Shpynov, Michael Raymond and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Obesity Disrupts H3K4me3-Mediated Lactate Accumulation and Efferocytosis in Hypoxic Macrophages.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. EGR2 maintains neuropathic pain by promoting microglial phagocytosis.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 3 countries.

Turan TufanDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Gamze ComertpayDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Ambra VillaniDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-4468-6353
Geoffrey M NelsonDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-9825-4241
Marina TerekhovaDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Shannon KelleyDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Pavel ZakharovDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Rochelle M EllisonDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0003-2080-5837
Oleg ShpynovDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Michael RaymondDepartment of Neuroscience and MIC, University of Virginia, Charlottesville, VA, USA.
Jerry SunDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Yitan ChenDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0001-9868-3097
Enno BockelmannDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-8597-7811
Marta StremskaDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Lance W PetersonDepartment of Pediatrics, Division of Rheumatology and Immunology, Washington University in St. Louis, St. Louis, MO, USA.
Laura BoeckaertsUnit for Cell Clearance in Health and Disease, VIB-UGent Center for Inflammation Research and the Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Seth R GoldmanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-5096-3778
J Iker EtchegarayDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Maxim N ArtyomovDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-1133-4212
Francesca PeriDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Kodi S RavichandranDivision of Immunobiology, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA. kodi@wustl.edu.ORCID 0000-0001-9049-1410
Washington University in St. Louis · USUniversity of Zurich · CHHarvard University · USUniversity of Virginia · USVIB-UGent Center for Inflammation Research · BE

Funding

TRAINING PROGRAM IN IMMUNOLOGY AND IMMUNOGENETICST32AI007163 · NIAID · WASHINGTON UNIVERSITY · PI Kenneth M Murphy, Kodi S Ravichandran · 1985 to 2026
$14.8M
Solute carrier proteins in efferocytosis and inflammationR01AI159551 · NIAID · WASHINGTON UNIVERSITY · PI RAVICHANDRAN, KODI S · 2021 to 2025
$2.9M
Solute carrier proteins and metal ion-based signaling during efferocytosisR37AI159551 · NIAID · WASHINGTON UNIVERSITY · PI Kodi S Ravichandran · 2026 to 2026
$611k
Insulin, a new role in retinal homeostasis and diseaseF32EY031211 · NEI · UNIVERSITY OF VIRGINIA · PI ETCHEGARAY, JON IKER · 2020 to 2021
$142k
Testing the tyrosine phosphatase SHP-2 as a novel brake on efferocytosisF31HL160134 · NHLBI · WASHINGTON UNIVERSITY · PI KELLEY, SHANNON · 2021 to 2023
$107k
American Heart Association-American Stroke Association 835593NEI NIH HHS F32 EY031211NHLBI NIH HHS F31 HL160134NIAID NIH HHS R01 AI159551NIAID NIH HHS R37 AI159551NIAID NIH HHS T32 AI007163
6 · The paper itself

Abstract

During development, inflammation or tissue injury, macrophages may successively engulf and process multiple apoptotic corpses via efferocytosis to achieve tissue homeostasis

Indexed as

EfferocytosisMacrophagesRNA Polymerase IITranscription Elongation, GeneticAnimalsApoptosisCytoskeletonEarly Growth Response Protein 3HumansHydrogen-Ion ConcentrationMaleMiceNeuronsPhagosomesTime FactorsTranscription FactorsEarly Growth Response Protein 3EGR3 protein, humanEgr3 protein, mouseRNA Polymerase IITranscription Factors

Identifiers

PMID38480883
PMCPMC12573440
OpenAlexW4392747546

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.