Evidence map›Paper›PMID 38503727›Full record

ArticleNature communications2024

Oncogenic enhancers prime quiescent metastatic cells to escape NK immune surveillance by eliciting transcriptional memory.

Daniela Michelatti, Sven Beyes, Chiara Bernardis, Maria Luce Negri, Leonardo Morelli, Naiara Garcia Bediaga, Vittoria Poli, Luca Fagnocchi, Sara Lago, Sarah D'Annunzio and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 5 countries.

Daniela MichelattiDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Sven BeyesDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Chiara BernardisDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Maria Luce NegriDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Leonardo MorelliDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID 0000-0002-2477-5172
Naiara Garcia BediagaDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Vittoria PoliDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Luca FagnocchiDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID 0000-0002-9551-5474
Sara LagoDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID 0000-0001-5179-550X
Sarah D'AnnunzioDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Nicole ConaDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Ilaria GaspardoDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Aurora BianchiDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Jovana JoveticDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Matteo GianeselloDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Alice TurdoDepartment of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialties (PROMISE), University of Palermo, Palermo, Italy.ORCID 0000-0002-6152-4903
Caterina D'AccardoDepartment of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialties (PROMISE), University of Palermo, Palermo, Italy.
Miriam GaggianesiDepartment of Surgical, Oncological and Stomatological Sciences (DICHIRONS), University of Palermo, Palermo, Italy.
Martina DoriDepartment of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
Mattia ForcatoDepartment of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.ORCID 0000-0002-7383-6576
Giuliano CrispatzuCenter for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.ORCID 0000-0001-8041-2125
Alvaro Rada-IglesiasInstitute of Biomedicine and Biotechnology of Cantabria (IBBTEC), CSIC/Universidad de Cantabria, Santander, Spain.ORCID 0000-0001-7137-1341
Maria Soledad SosaDepartment of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
H T Marc TimmersDepartment of Urology, Medical Center-University of Freiburg, Freiburg, Germany.ORCID 0000-0001-7062-1417
Silvio BicciatoDepartment of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.ORCID 0000-0002-1944-7078
Matilde TodaroDepartment of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialties (PROMISE), University of Palermo, Palermo, Italy.ORCID 0000-0001-8686-8043
Luca TiberiDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID 0000-0002-5983-3782
Alessio ZippoDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy. alessio.zippo@unitn.it.ORCID 0000-0002-3686-6151
University of Trento · ITUniversity of Palermo · ITUniversity of Modena and Reggio Emilia · ITIcahn School of Medicine at Mount Sinai · USUniversidad de Cantabria · ESUniversity of Cologne · DEUniversity of Freiburg · DEVan Andel Institute · US

Funding

Functional Analysis of Distinct and Co-existing Transcriptional Programs Regulating Tumor DormancyR01CA266443 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Maria Sosa · 2023 to 2026
$1.5M
Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) IG 2019-22911EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 801336; - PROCHIPNCI NIH HHS R01 CA266443
6 · The paper itself

Abstract

Metastasis arises from disseminated tumour cells (DTCs) that are characterized by intrinsic phenotypic plasticity and the capability of seeding to secondary organs. DTCs can remain latent for years before giving rise to symptomatic overt metastasis. In this context, DTCs fluctuate between a quiescent and proliferative state in response to systemic and microenvironmental signals including immune-mediated surveillance. Despite its relevance, how intrinsic mechanisms sustain DTCs plasticity has not been addressed. By interrogating the epigenetic state of metastatic cells, we find that tumour progression is coupled with the activation of oncogenic enhancers that are organized in variable interconnected chromatin domains. This spatial chromatin context leads to the activation of a robust transcriptional response upon repeated exposure to retinoic acid (RA). We show that this adaptive mechanism sustains the quiescence of DTCs through the activation of the master regulator SOX9. Finally, we determine that RA-stimulated transcriptional memory increases the fitness of metastatic cells by supporting the escape of quiescent DTCs from NK-mediated immune surveillance. Overall, these findings highlight the contribution of oncogenic enhancers in establishing transcriptional memories as an adaptive mechanism to reinforce cancer dormancy and immune escape, thus amenable for therapeutic intervention.

Indexed as

Immunologic SurveillanceRegulatory Sequences, Nucleic AcidCell DivisionCell Line, TumorChromatinChromatin

Identifiers

PMID38503727
PMCPMC10951355
OpenAlexW4392956086

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.