Evidence map›Paper›PMID 38528797›Full record

ArticleRNA biology2024

BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification.

Anderson P Avila Santos, Breno L S de Almeida, Robson P Bonidia, Peter F Stadler, Polonca Stefanic, Ines Mandic-Mulec, Ulisses Rocha, Danilo S Sanches, André C P L F de Carvalho

Open access · goldAbstract read
In one paragraph

Article in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Anderson P Avila SantosInstitute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.
Breno L S de AlmeidaInstitute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.
Robson P BonidiaInstitute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.
Peter F StadlerDepartment of Computer Science and Interdisciplinary Center of Bioinformatics, University of Leipzig, Leipzig, Saxony, Germany.
Polonca StefanicDepartment of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Ines Mandic-MulecDepartment of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Ulisses RochaDepartment of Applied Microbial Ecology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony, Germany.
Danilo S SanchesDepartment of Computer Science, Federal University of Technology - Paraná, UTFPR, Cornélio Procópio, Brazil.
André C P L F de CarvalhoInstitute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.
Helmholtz Centre for Environmental Research · DEUniversidade de São Paulo · BRUniversidade Tecnológica Federal do Paraná · BRUniversity of Ljubljana · SILeipzig University · DE

Funding

ARIS project J1-4411Canada’s International Development Research Centre [IDRC] 109981Coordenação de Aperfeiçoamento de Pessoal de Nível Superior [CAPES] - Universidade de São Paulo [USP] 2023/00264-0
6 · The paper itself

Abstract

The accurate classification of non-coding RNA (ncRNA) sequences is pivotal for advanced non-coding genome annotation and analysis, a fundamental aspect of genomics that facilitates understanding of ncRNA functions and regulatory mechanisms in various biological processes. While traditional machine learning approaches have been employed for distinguishing ncRNA, these often necessitate extensive feature engineering. Recently, deep learning algorithms have provided advancements in ncRNA classification. This study presents BioDeepFuse, a hybrid deep learning framework integrating convolutional neural networks (CNN) or bidirectional long short-term memory (BiLSTM) networks with handcrafted features for enhanced accuracy. This framework employs a combination of

Indexed as

Deep LearningAlgorithmsNeural Networks, ComputerRNARNA, UntranslatedRNARNA, Untranslatedbiological processesdeep learningfeature extractiongene regulationmodel performanceneural networksNon-coding RNARNA identification

Identifiers

PMID38528797
PMCPMC10968306
OpenAlexW4393182935

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.