Evidence map›Paper›PMID 38529063›Full record

ArticleFrontiers in plant science2024

Transcriptome and co-expression network revealed molecular mechanism underlying selenium response of foxtail millet (

Yinyuan Wen, Liuna Cheng, Zeya Zhao, Mengyao An, Shixue Zhou, Juan Zhao, Shuqi Dong, Xiangyang Yuan, Meiqiang Yin

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yinyuan WenCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Liuna ChengCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Zeya ZhaoCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Mengyao AnCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Shixue ZhouCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Juan ZhaoCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Shuqi DongCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Xiangyang YuanCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Meiqiang YinCollege of Agronomy, Shanxi Agricultural University, Jinzhong, China.
Shanxi Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Selenium-enriched foxtail millet ( Methods: To unravel the molecular mechanisms governing selenium accumulation and transportation in foxtail millet, we conducted a comprehensive analysis of selenium content and transcriptome responses in foxtail millet spikelets across different days (3, 5, 7, and 12) under Na Results: Foxtail millet subjected to selenium fertilizer exhibited significantly elevated selenium levels in each tissue compared to the untreated control. Selenate was observed to be transported and accumulated sequentially in the leaf, stem, and spikes. Transcriptome analysis unveiled a substantial upregulation in the transcription levels of genes associated with selenium metabolism and transport, including sulfate, phosphate, and nitrate transporters, ABC transporters, antioxidants, phytohormone signaling, and transcription factors. These genes demonstrated intricate interactions, both synergistic and antagonistic, forming a complex network that regulated selenate transport mechanisms. Gene co-expression network analysis highlighted three transcription factors in the tan module and three transporters in the turquoise module that significantly correlated with selenium accumulation and transportation. Expression of sulfate transporters (SiSULTR1.2b and SiSULTR3.1a), phosphate transporter (PHT1.3), nitrate transporter 1 (NRT1.1B), glutathione S-transferase genes (GSTs), and ABC transporter (ABCC13) increased with SeO Conclusion: This study provides preliminary insights into the mechanisms of selenium accumulation and transportation in foxtail millet. The findings hold theoretical significance for the cultivation of selenium-enriched foxtail millet.

Indexed as

foxtail milletphytohormonesRNA-sequencingSelenium biofortificationsulfate transportersWGCNA

Identifiers

PMID38529063
PMCPMC10962390
OpenAlexW4392659893

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.