Evidence map›Paper›PMID 38530818›Full record

ArticlePLoS genetics2024

Spoink, a LTR retrotransposon, invaded D. melanogaster populations in the 1990s.

Riccardo Pianezza, Almorò Scarpa, Prakash Narayanan, Sarah Signor, Robert Kofler

Abstract read
In one paragraph

Article in PLoS genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Rapid evolution and comparative analysis of piRNA clusters inbioRxiv : the preprint server for biology · 2026
    Article
  3. Recent horizontal transfer of transposable elements inbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. The ongoing invasion of the endogenous retrovirusbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Riccardo PianezzaInstitut für Populationsgenetik, Vetmeduni Vienna, Vienna, Austria.ORCID 0009-0007-6213-7853
Almorò ScarpaInstitut für Populationsgenetik, Vetmeduni Vienna, Vienna, Austria.
Prakash NarayananBiological Sciences, North Dakota State University, Fargo, North Dakota, United States of America.
Sarah SignorBiological Sciences, North Dakota State University, Fargo, North Dakota, United States of America.
Robert KoflerInstitut für Populationsgenetik, Vetmeduni Vienna, Vienna, Austria.ORCID 0000-0001-9960-7248

Funding

Co-evolutionary dynamics between transposable elements and their hostsR35GM155272 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI Sarah Signor · 2024 to 2026
$1.1M
National Science Foundation Established Program to Stimulate Competitive Research grants NSF-EPSCOR-1826834National Science Foundation Established Program to Stimulate Competitive Research grants NSF-EPSCOR-2032756NIGMS NIH HHS R35 GM155272
6 · The paper itself

Abstract

During the last few centuries D. melanogaster populations were invaded by several transposable elements, the most recent of which was thought to be the P-element between 1950 and 1980. Here we describe a novel TE, which we named Spoink, that has invaded D. melanogaster. It is a 5216nt LTR retrotransposon of the Ty3/gypsy superfamily. Relying on strains sampled at different times during the last century we show that Spoink invaded worldwide D. melanogaster populations after the P-element between 1983 and 1993. This invasion was likely triggered by a horizontal transfer from the D. willistoni group, much as the P-element. Spoink is probably silenced by the piRNA pathway in natural populations and about 1/3 of the examined strains have an insertion into a canonical piRNA cluster such as 42AB. Given the degree of genetic investigation of D. melanogaster it is perhaps surprising that Spoink was able to invade unnoticed.

Indexed as

Drosophila melanogasterRetroelementsAnimalsDNA Transposable ElementsDrosophilaPiwi-Interacting RNADNA Transposable ElementsPiwi-Interacting RNARetroelements

Identifiers

PMID38530818
PMCPMC10965091

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.