Evidence map›Paper›PMID 38536036›Full record

ArticleThe Journal of cell biology2024

The GTPase activating protein Gyp7 regulates Rab7/Ypt7 activity on late endosomes.

Nadia Füllbrunn, Raffaele Nicastro, Muriel Mari, Janice Griffith, Eric Herrmann, René Rasche, Ann-Christin Borchers, Kathrin Auffarth, Daniel Kümmel, Fulvio Reggiori and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Rab27: Molecular switch of tumor exosome secretion (Review).International journal of molecular medicine · 2026
    Review
  2. Article
  3. The cytokinesis regulator RacGAP1 is a Rac1-specific GAP on membranes.Protein science : a publication of the Protein Society · 2026
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Nadia FüllbrunnDepartment of Biology/Chemistry, Biochemistry Section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0003-1263-3166
Raffaele NicastroDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-5420-2228
Muriel MariDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-2677-6945
Janice GriffithDepartment of Cell Biology, University Medical Center Utrecht, Utrecht, Netherlands.
Eric HerrmannInstitute of Biochemistry, University of Münster , Münster, Germany.ORCID 0000-0003-0499-0083
René RascheInstitute of Biochemistry, University of Münster , Münster, Germany.ORCID 0000-0002-5821-3557
Ann-Christin BorchersDepartment of Biology/Chemistry, Biochemistry Section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0003-2466-0129
Kathrin AuffarthDepartment of Biology/Chemistry, Biochemistry Section, Osnabrück University, Osnabrück, Germany.ORCID 0009-0009-2077-0663
Daniel KümmelInstitute of Biochemistry, University of Münster , Münster, Germany.ORCID 0000-0003-3950-5914
Fulvio ReggioriDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0003-2652-2686
Claudio De VirgilioDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0001-8826-4323
Lars LangemeyerDepartment of Biology/Chemistry, Biochemistry Section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0002-4309-0910
Christian UngermannDepartment of Biology/Chemistry, Biochemistry Section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0003-4331-8695
Osnabrück University · DEUniversity of Münster · DEAarhus University · DKUniversity of Fribourg · CHUniversity Medical Center Utrecht · NL

Funding

Swiss National Science Foundation 310030_184671
6 · The paper itself

Abstract

Organelles of the endomembrane system contain Rab GTPases as identity markers. Their localization is determined by guanine nucleotide exchange factors (GEFs) and GTPase activating proteins (GAPs). It remains largely unclear how these regulators are specifically targeted to organelles and how their activity is regulated. Here, we focus on the GAP Gyp7, which acts on the Rab7-like Ypt7 protein in yeast, and surprisingly observe the protein exclusively in puncta proximal to the vacuole. Mistargeting of Gyp7 to the vacuole strongly affects vacuole morphology, suggesting that endosomal localization is needed for function. In agreement, efficient endolysosomal transport requires Gyp7. In vitro assays reveal that Gyp7 requires a distinct lipid environment for membrane binding and activity. Overexpression of Gyp7 concentrates Ypt7 in late endosomes and results in resistance to rapamycin, an inhibitor of the target of rapamycin complex 1 (TORC1), suggesting that these late endosomes are signaling endosomes. We postulate that Gyp7 is part of regulatory machinery involved in late endosome function.

Indexed as

Endosomesrab GTP-Binding Proteinsras GTPase-Activating ProteinsSaccharomyces cerevisiae ProteinsBiological TransportSaccharomyces cerevisiaeSignal TransductionVacuolesGyp7 protein, S cerevisiaerab GTP-Binding Proteinsras GTPase-Activating ProteinsSaccharomyces cerevisiae ProteinsYPT7 protein, S cerevisiae

Identifiers

PMID38536036
PMCPMC10978497
OpenAlexW4393223707

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.