Evidence map›Paper›PMID 38540410›Full record

ReviewGenes2024

Population Structure and Selection Signal Analysis of Nanyang Cattle Based on Whole-Genome Sequencing Data.

Yan Zhang, Zhitong Wei, Man Zhang, Shiwei Wang, Tengyun Gao, Hetian Huang, Tianliu Zhang, Hanfang Cai, Xian Liu, Tong Fu and 1 more

Open access · goldAbstract readReview
PubMed Full text at PMC Publisher
In one paragraph

Review in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yan ZhangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Zhitong WeiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Man ZhangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Shiwei WangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Tengyun GaoCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Hetian HuangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Tianliu ZhangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Hanfang CaiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Xian LiuHenan Animal Husbandry Station, Zhengzhou 450008, China.
Tong FuCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Dong LiangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450046, China.
Henan Agricultural University · CNShandong Province Animal Husbandry and Veterinary Bureau · CN

Funding

Application and Demonstration of High Quality Beef Cattle High Efficient and Safe Feeding Technology 2018YFD0501704the Major Scientific and Technological Special Project of Henan Province 221100110200the National Natural Science Foundation of China 32002168the National Natural Science Foundation of China 32202636Third National Census of Livestock and Poultry Genetic Resources CARS-36
6 · The paper itself

Abstract

With a rich breeding history, Nanyang cattle (NY cattle) have undergone extensive natural and artificial selection, resulting in distinctive traits such as high fertility, excellent meat quality, and disease resistance. This makes them an ideal model for studying the mechanisms of environmental adaptability. To assess the population structure and genetic diversity of NY cattle, we performed whole-genome resequencing on 30 individuals. These data were then compared with published whole-genome resequencing data from 432 cattle globally. The results indicate that the genetic structure of NY cattle is significantly different from European commercial breeds and is more similar to North-Central Chinese breeds. Furthermore, among all breeds, NY cattle exhibit the highest genetic diversity and the lowest population inbreeding levels. A genome-wide selection signal analysis of NY cattle and European commercial breeds using Fst, θπ-ratio, and θπ methods revealed significant selection signals in genes associated with reproductive performance and immunity. Our functional annotation analysis suggests that these genes may be responsible for reproduction (

Indexed as

GenomeAnimalsCattleHumansPhenotypeSequence Analysis, DNAWhole Genome Sequencinggenetic diversityNanyang cattlepopulation structurewhole-genome resequencing

Identifiers

PMID38540410
PMCPMC10970060
OpenAlexW4392660333

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.