Evidence map›Paper›PMID 38540728›Full record

ArticleBiomolecules2024

Integrated Analysis of lncRNAs and mRNAs Reveals Complex Gene Network Mediated by lncRNAs and Regulatory Function of

Zixuan Liu, Chaorui Liu, Teng Zhao, Lulu Yang, Qiqi Shang, Gefan Wang, Zhaoyang Liu, Yingping Gai, Xianling Ji

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Zixuan LiuCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Chaorui LiuCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Teng ZhaoCollege of Life Sciences, Shandong Agricultural University, Taian 271018, China.
Lulu YangCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Qiqi ShangCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Gefan WangCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Zhaoyang LiuCollege of Forestry, Shandong Agricultural University, Taian 271018, China.
Yingping GaiCollege of Life Sciences, Shandong Agricultural University, Taian 271018, China.
Xianling JiCollege of Forestry, Shandong Agricultural University, Taian 271018, China.ORCID 0000-0002-4868-0012
Shandong Agricultural University · CN

Funding

Modern Agricultural Technology System of Shandong Province No. SDAIT-18-04National Natural Science Foundation of China 32172799 and 32171748
6 · The paper itself

Abstract

Phytoplasma disease is one of the most serious infectious diseases that affects the growth and development of mulberry. Long non-coding RNAs (lncRNAs) play an important role in plants' defense systems; however, the contribution of lncRNAs in the response to phytoplasma infection in mulberry is still largely unknown. Herein, strand-specific RNA sequencing was performed to profile the mRNAs and lncRNAs involved in the response to phytoplasma infection in mulberry, and a total of 4169 genes were found to be differentially expressed (DE) between healthy and phytoplasma-infected leaves. Moreover, 1794 lncRNAs were identified, of which 742 lncRNAs were DE between healthy and infected leaves. Target prediction showed that there were 68 and 44 DE lncRNAs which may function as cis and trans-regulators, targeting 54 and 44 DE genes, respectively. These DE target genes are associated with biological processes such as metabolism, signaling, development, transcriptional regulation, etc. In addition, it was found that the expression of the antisense lncRNA (

Indexed as

MorusRNA, Long NoncodingGene Expression ProfilingGene Regulatory NetworksPhytoplasma DiseasePlants, Genetically ModifiedRNA, MessengerRNA, Long NoncodingRNA, MessengerlncRNALRR receptor-like serine/threonine-protein kinasemulberryphytoplasma

Identifiers

PMID38540728
PMCPMC10967971
OpenAlexW4392472918

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.