Evidence map›Paper›PMID 38554115›Full record

ArticleNucleic acids research2024

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.

Eray Enustun, Emily G Armbruster, Jina Lee, Sitao Zhang, Brian A Yee, Kseniya Malukhina, Yajie Gu, Amar Deep, Jack T Naritomi, Qishan Liang and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. The biology of jumbo phages.Nature communications · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Bacteriophage genome-wide transposon mutagenesis.bioRxiv : the preprint server for biology · 2025
    Article
  8. Review
  9. Article
  10. The Biology of Nucleus-Forming Jumbo Phages.Annual review of genetics · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A transcriptionally active lipid vesicle encloses the injectedbioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Eray EnustunDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093, USA.
Emily G ArmbrusterDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-0377-1209
Jina LeeDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093, USA.
Sitao ZhangDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Brian A YeeDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Kseniya MalukhinaDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Yajie GuDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Amar DeepDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Jack T NaritomiDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Qishan LiangDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Stefan AignerDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Benjamin A AdlerCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-7488-3040
Brady F CressInnovative Genomics Institute, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-2948-2846
Jennifer A DoudnaCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA.
Vorrapon ChaikeeratisakDepartment of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Don W ClevelandDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Majid GhassemianBiomolecular and Proteomics Mass Spectrometry Facility, University of California San Diego, La Jolla, CA 92093, USA.
Bogdan BintuDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Joe PoglianoDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093, USA.
Kevin D CorbettDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-5854-2388
University of California San Diego · USQB3 · USChulalongkorn University · THInnovative Genomics Institute · US

Funding

Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Molecular and cellular biology of the phage nucleus and spindleR01GM129245 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, JOSEPH A · 2018 to 2025
$4.2M
Molecular mechanisms of nucleic acid recognition and maintenance in meiosis and innate immunityR35GM144121 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett · 2022 to 2026
$2.7M
Acquisition of an Orbitrap Elite with ETDS10OD021724 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 2016 to 2016
$600k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG004659NIGMS NIH HHS R01 GM129245NIGMS NIH HHS R35 GM144121NIGMS NIH HHS T32 GM133351NIH HHS R01 GM129245NIH HHS S10 OD021724
6 · The paper itself

Abstract

Large-genome bacteriophages (jumbo phages) of the proposed family Chimalliviridae assemble a nucleus-like compartment bounded by a protein shell that protects the replicating phage genome from host-encoded restriction enzymes and DNA-targeting CRISPR-Cas nucleases. While the nuclear shell provides broad protection against host nucleases, it necessitates transport of mRNA out of the nucleus-like compartment for translation by host ribosomes, and transport of specific proteins into the nucleus-like compartment to support DNA replication and mRNA transcription. Here, we identify a conserved phage nuclear shell-associated protein that we term Chimallin C (ChmC), which adopts a nucleic acid-binding fold, binds RNA with high affinity in vitro, and binds phage mRNAs in infected cells. ChmC also forms phase-separated condensates with RNA in vitro. Targeted knockdown of ChmC using mRNA-targeting dCas13d results in accumulation of phage-encoded mRNAs in the phage nucleus, reduces phage protein production, and compromises virion assembly. Taken together, our data show that the conserved ChmC protein plays crucial roles in the viral life cycle, potentially by facilitating phage mRNA translocation through the nuclear shell to promote protein production and virion development.

Indexed as

BacteriophagesRNA-Binding ProteinsCell NucleusCRISPR-Cas SystemsGenome, ViralRNA, MessengerRNA, ViralViral ProteinsVirus AssemblyRNA-Binding ProteinsRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID38554115
PMCPMC11077065
OpenAlexW4393334409

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.