Evidence map›Paper›PMID 38560776›Full record

ArticleMicrobiologyOpen2024

Characterizing arginine, ornithine, and putrescine pathways in enteric pathobionts.

Ian M Lillie, Charles E Booth, Adelaide E Horvath, Matthew Mondragon, Melinda A Engevik, Thomas D Horvath

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Metabolic profiling of Escherichia coli under deuterium oxide-induced stress.Metabolomics : Official journal of the Metabolomic Society · 2026
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  10. Review
  11. Heat-Induced Pathophysiological and Metabolic Changes at the Feto-Maternal Interface Predisposing to Preterm Birth.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  12. Article
  13. LC-MS/MS metabolomics unravels the resistant phenotype of carbapenemase-producing Enterobacterales.Metabolomics : Official journal of the Metabolomic Society · 2025
    Article
  14. mSystems · 2025
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ian M LillieDepartment of Materials Science & Engineering, Cornell University, Ithaca, New York, USA.
Charles E BoothDepartment of Regenerative Medicine & Cell Biology, Medical University of South Carolina, Charleston, South Carolina, USA.
Adelaide E HorvathDepartment of Regenerative Medicine & Cell Biology, Medical University of South Carolina, Charleston, South Carolina, USA.ORCID 0009-0003-7209-8414
Matthew MondragonDepartment of Regenerative Medicine & Cell Biology, Medical University of South Carolina, Charleston, South Carolina, USA.
Melinda A EngevikDepartment of Regenerative Medicine & Cell Biology, Medical University of South Carolina, Charleston, South Carolina, USA.ORCID 0000-0002-9742-9932
Thomas D HorvathDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-9761-3484
Medical University of South Carolina · USBaylor College of Medicine · US

Funding

NIH HHS K01K123195-01
6 · The paper itself

Abstract

Arginine-ornithine metabolism plays a crucial role in bacterial homeostasis, as evidenced by numerous studies. However, the utilization of arginine and the downstream products of its metabolism remain undefined in various gut bacteria. To bridge this knowledge gap, we employed genomic screening to pinpoint relevant metabolic targets. We also devised a targeted liquid chromatography-tandem mass spectrometry (LC-MS/MS) metabolomics method to measure the levels of arginine, its upstream precursors, and downstream products in cell-free conditioned media from enteric pathobionts, including Escherichia coli, Klebsiella aerogenes, K. pneumoniae, Pseudomonas fluorescens, Acinetobacter baumannii, Streptococcus agalactiae, Staphylococcus epidermidis, S. aureus, and Enterococcus faecalis. Our findings revealed that all selected bacterial strains consumed glutamine, glutamate, and arginine, and produced citrulline, ornithine, and GABA in our chemically defined medium. Additionally, E. coli, K. pneumoniae, K. aerogenes, and P. fluorescens were found to convert arginine to agmatine and produce putrescine. Interestingly, arginine supplementation promoted biofilm formation in K. pneumoniae, while ornithine supplementation enhanced biofilm formation in S. epidermidis. These findings offer a comprehensive insight into arginine-ornithine metabolism in enteric pathobionts.

Indexed as

OrnithinePutrescineArginineBacteriaChromatography, LiquidEscherichia coliKlebsiella pneumoniaeStaphylococcus aureusTandem Mass SpectrometryArginineOrnithinePutrescinebacteriagenomeLC‐MS/MStargeted metabolomics

Identifiers

PMID38560776
PMCPMC10982811
OpenAlexW4393389245

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.