Evidence map›Paper›PMID 38565965›Full record

ArticleScientific reports2024

Expression of the Arabidopsis redox-related LEA protein, SAG21 is regulated by ERF, NAC and WRKY transcription factors.

Kelly V Evans, Elspeth Ransom, Swapna Nayakoti, Ben Wilding, Faezah Mohd Salleh, Irena Gržina, Lieselotte Erber, Carmen Tse, Claire Hill, Krzysztof Polanski and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. CaBMC plant biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Kelly V EvansSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Elspeth RansomSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Swapna NayakotiSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Ben WildingSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Faezah Mohd SallehSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Irena GržinaSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Lieselotte ErberSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Carmen TseSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Claire HillSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Krzysztof PolanskiSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Alistair HollandSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Sherien BukhatSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Robert J HerbertSchool of Science and the Environment, University of Worcester, Henwick Grove, Worcester, WR2 6AJ, UK.
Barend H J de GraafSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK.
Katherine DenbyDepartment of Biology, Centre for Novel Agricultural Products (CNAP), University of York, Heslington, York, YO10 5DD, UK.
Vicky Buchanan-WollastonSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Hilary J RogersSchool of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AT, UK. rogershj@cardiff.ac.uk.
Cardiff University · GBUniversity of Warwick · GBUniversity of Technology Malaysia · MYUniversity of Worcester · GBUniversity of York · GB

Funding

BBSRC BBSRC BB/F005806/1ERASMUS Placement ProjectHigher Education Commision, Pakistan IRSIP 49 BMS 01IAESTE UK UK/12/200/05fMalaysian government PhD studentship
6 · The paper itself

Abstract

SAG21/LEA5 is an unusual late embryogenesis abundant protein in Arabidopsis thaliana, that is primarily mitochondrially located and may be important in regulating translation in both chloroplasts and mitochondria. SAG21 expression is regulated by a plethora of abiotic and biotic stresses and plant growth regulators indicating a complex regulatory network. To identify key transcription factors regulating SAG21 expression, yeast-1-hybrid screens were used to identify transcription factors that bind the 1685 bp upstream of the SAG21 translational start site. Thirty-three transcription factors from nine different families bound to the SAG21 promoter, including members of the ERF, WRKY and NAC families. Key binding sites for both NAC and WRKY transcription factors were tested through site directed mutagenesis indicating the presence of cryptic binding sites for both these transcription factor families. Co-expression in protoplasts confirmed the activation of SAG21 by WRKY63/ABO3, and SAG21 upregulation elicited by oligogalacturonide elicitors was partially dependent on WRKY63, indicating its role in SAG21 pathogen responses. SAG21 upregulation by ethylene was abolished in the erf1 mutant, while wound-induced SAG21 expression was abolished in anac71 mutants, indicating SAG21 expression can be regulated by several distinct transcription factors depending on the stress condition.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantOxidation-ReductionPlant ProteinsStress, PhysiologicalTranscription FactorsArabidopsis ProteinsPlant ProteinsTranscription FactorsAbiotic stressBiotic stressEthyleneNAC transcription factorsSAG21/LEA5WRKY transcription factors

Identifiers

PMID38565965
PMCPMC10987515
OpenAlexW4393398553

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.