Evidence map›Paper›PMID 38573472›Full record

ArticleInfection2024

The yeast genus Tardiomyces gen. nov. with one new species and two new combinations.

Bram Spruijtenburg, Bruna Jacomel Favoreto de Souza Lima, Sonia T Granadillo Tosar, Andrew M Borman, Cecilie Torp Andersen, Summiya Nizamuddin, Suhail Ahmad, João Nobrega de Almeida Junior, Vânia Aparecida Vicente, Joshua D Nosanchuk and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Infection, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

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  10. Case report:Medical mycology case reports · 2024
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  11. Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 8 countries.

Bram SpruijtenburgDepartment of Medical Microbiology, Radboudumc, Nijmegen, The Netherlands. Bram.Spruijtenburg@radboudumc.nl.
Bruna Jacomel Favoreto de Souza LimaRadboudumc-CWZ Center of Expertise for Mycology, Nijmegen, The Netherlands.
Sonia T Granadillo TosarRadboudumc-CWZ Center of Expertise for Mycology, Nijmegen, The Netherlands.
Andrew M BormanUK Health Security Agency National Mycology Reference Laboratory, Southmead Hospital, Bristol, BS10 5NB, UK.
Cecilie Torp AndersenDepartment of Microbiology, Oslo University Hospital, Rikshospitalet, Oslo, Norway.
Summiya NizamuddinSection of Microbiology, Shaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, Pakistan.
Suhail AhmadDepartment of Microbiology, Faculty of Medicine, Kuwait University, Safat, Kuwait.
João Nobrega de Almeida JuniorLaboratório Especial de Micologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Vânia Aparecida VicenteMicrobiology, Parasitology and Pathology Post-Graduation Program, Department of Pathology, Federal University of Paraná, Curitiba, Paraná, Brazil.
Joshua D NosanchukDepartment of Medicine (Division of Infectious Diseases) and Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY, USA.
Jochem B BuilDepartment of Medical Microbiology, Radboudumc, Nijmegen, The Netherlands.
Sybren de HoogRadboudumc-CWZ Center of Expertise for Mycology, Nijmegen, The Netherlands.
Eelco F J MeijerDepartment of Medical Microbiology, Radboudumc, Nijmegen, The Netherlands.
Jacques F MeisDepartment of Medical Microbiology, Radboudumc, Nijmegen, The Netherlands.
Theun de GrootRadboudumc-CWZ Center of Expertise for Mycology, Nijmegen, The Netherlands.
Radboud University Medical Center · NLAlbert Einstein College of Medicine · USKuwait University · KWOslo University Hospital · NORadboud University Nijmegen · NLShaukat Khanum Memorial Cancer Hospital and Research Center · PKUniversidade Federal de São Paulo · BRUniversidade Federal do Paraná · BRUniversidade Tecnológica Federal do Paraná · BRUniversity of Exeter · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeRare yeasts species are increasingly reported as causative agents of invasive human infection. Proper identification and antifungal therapy are essential to manage these infections. Candida blankii is one of these emerging pathogens and is known for its reduced susceptibility to multiple antifungals.

methodsTo obtain more insight into the characteristics of this species, 26 isolates reported as C. blankii were investigated using genetic and phenotypical approaches.

resultsAmong the 26 isolates, seven recovered either from blood, sputum, urine, or the oral cavity, displayed substantial genetic and some phenotypical differences compared to the other isolates, which were confirmed as C. blankii. We consider these seven strains to represent a novel species, Tardiomyces depauwii. Phylogenomics assigned C. blankii, C. digboiensis, and the novel species in a distinct branch within the order Dipodascales, for which the novel genus Tardiomyces is erected. The new combinations Tardiomyces blankii and Tardiomyces digboiensis are introduced. Differences with related, strictly environmental genera Sugiyamaella, Crinitomyces, and Diddensiella are enumerated. All three Tardiomyces species share the rare ability to grow up to 42 °C, display slower growth in nutrient-poor media, and show a reduced susceptibility to azoles and echinocandins. Characteristics of T. depauwii include high MIC values with voriconazole and a unique protein pattern.

conclusionWe propose the novel yeast species Tardiomyces depauwii and the transfer of C. blankii and C. digboiensis to the novel Tardiomyces genus.

Indexed as

Antifungal AgentsPhylogenyHumansMicrobial Sensitivity TestsAntifungal AgentsAntifungal resistanceCandida blankiiCharacterizationMisidentificationNomenclatureTardiomyces depauwiiWhole-genome sequencing

Identifiers

PMID38573472
PMCPMC11499460
OpenAlexW4393932166

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.