Evidence map›Paper›PMID 38577366›Full record

ArticleChemical science2024

Protein oxidation of fucose environments (POFE) reveals fucose-protein interactions.

Yixuan Xie, Siyu Chen, Michael Russelle Alvarez, Ying Sheng, Qiongyu Li, Emanual Maverakis, Carlito B Lebrilla

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Metabolic control of glycosylation forms for establishing glycan-dependent protein interaction networks.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yixuan XieDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.
Siyu ChenDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.ORCID https://orcid.org/0009-0003-9584-6905
Michael Russelle AlvarezDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.ORCID https://orcid.org/0000-0001-6411-9906
Ying ShengDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.
Qiongyu LiDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.ORCID https://orcid.org/0000-0003-3654-0378
Emanual MaverakisDepartment of Dermatology, University of California, Davis Sacramento California USA.
Carlito B LebrillaDepartment of Chemistry, University of California, Davis Davis California USA cblebrilla@ucdavis.edu.ORCID https://orcid.org/0000-0001-7190-5323
University of California, Davis · USWashington University in St. Louis · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI KC KENT LLOYD · 2002 to 2026
$84.9M
NCI NIH HHS P30 CA093373
6 · The paper itself

Abstract

Cell membrane glycoproteins are generally highly fucosylated and sialylated, and post-translational modifications play important roles in the proteins' functions of signaling, binding and cellular processing. For these reasons, methods for measuring sialic acid-mediated protein-protein interactions have been developed. However, determining the role of fucose in these interactions has been limited by technological barriers that have thus far hindered the ability to characterize and observe fucose-mediated protein-protein interactions. Herein, we describe a method to metabolically label mammalian cells with modified fucose, which incorporates a bioorthogonal group into cell membrane glycoproteins thereby enabling the characterization of cell-surface fucose interactome. Copper-catalyzed click chemistry was used to conjugate a proximity labeling probe, azido-FeBABE. Following the addition of hydrogen peroxide (H

Identifiers

PMID38577366
PMCPMC10988611
OpenAlexW4392665876

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.