Evidence map›Paper›PMID 38579708›Full record

ArticleStem cell reports2024

Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers.

Pavel Tsaytler, Gaby Blaess, Manuela Scholze-Wittler, Frederic Koch, Bernhard G Herrmann

Abstract read
In one paragraph

Article in Stem cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Pavel TsaytlerDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany. Electronic address: tsaytler@molgen.mpg.de.
Gaby BlaessDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Manuela Scholze-WittlerDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Frederic KochDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany. Electronic address: koch@molgen.mpg.de.
Bernhard G HerrmannDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany. Electronic address: herrmann@molgen.mpg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SOX2 is a transcription factor involved in the regulatory network maintaining the pluripotency of embryonic stem cells in culture as well as in early embryos. In addition, SOX2 plays a pivotal role in neural stem cell formation and neurogenesis. How SOX2 can serve both processes has remained elusive. Here, we identified a set of SOX2-dependent neural-associated enhancers required for neural lineage priming. They form a distinct subgroup (1,898) among 8,531 OCT4/SOX2/NANOG-bound enhancers characterized by enhanced SOX2 binding and chromatin accessibility. Activation of these enhancers is triggered by neural induction of wild-type cells or by default in Smad4-ablated cells resistant to mesoderm induction and is antagonized by mesodermal transcription factors via Sox2 repression. Our data provide mechanistic insight into the transition from the pluripotency state to the early neural fate and into the regulation of early neural versus mesodermal specification in embryonic stem cells and embryos.

Indexed as

Enhancer Elements, GeneticMesodermNeural Stem CellsSOXB1 Transcription FactorsAnimalsCell DifferentiationCell LineageChromatinEmbryonic Stem CellsGene Expression Regulation, DevelopmentalMiceMouse Embryonic Stem CellsNanog Homeobox ProteinNeurogenesisOctamer Transcription Factor-3Protein BindingChromatinNanog Homeobox ProteinOctamer Transcription Factor-3Smad4 ProteinSOXB1 Transcription Factorsdefault neurogenesisdifferentiationembryonic stem cellsenhancerslineage choicemesodermneural inductionSox2

Identifiers

PMID38579708
PMCPMC11103784

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.