Evidence map›Paper›PMID 38593198›Full record

ArticleThe Plant cell2024

Translational activation by a synthetic PPR protein elucidates control of psbA translation in Arabidopsis chloroplasts.

Margarita Rojas, Prakitchai Chotewutmontri, Alice Barkan

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Opposing action of photosystem II assembly factors RBD1 and HCF136 underlies light-regulatedProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Focus on photosynthesis.The Plant cell · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Margarita RojasInstitute of Molecular Biology, University of Oregon, Eugene, OR 97405, USA.ORCID 0009-0008-4473-706X
Prakitchai ChotewutmontriInstitute of Molecular Biology, University of Oregon, Eugene, OR 97405, USA.ORCID 0000-0002-8672-2973
Alice BarkanInstitute of Molecular Biology, University of Oregon, Eugene, OR 97405, USA.ORCID 0000-0003-3049-2838
University of Oregon · US

Funding

National Science Foundation
6 · The paper itself

Abstract

Translation initiation on chloroplast psbA mRNA in plants scales with light intensity, providing its gene product, D1, as needed to replace photodamaged D1 in Photosystem II. The psbA translational activator HIGH CHLOROPHYLL FLUORESCENCE 173 (HCF173) has been hypothesized to mediate this regulation. HCF173 belongs to the short-chain dehydrogenase/reductase superfamily, associates with the psbA 5'-untranslated region (5'-UTR), and has been hypothesized to enhance translation by binding an RNA segment that would otherwise pair with and mask the ribosome binding region. To test these hypotheses, we examined whether a synthetic pentatricopeptide repeat (sPPR) protein can substitute for HCF173 when bound to the HCF173 binding site. We show that an sPPR designed to bind HCF173's footprint in the psbA 5'-UTR bound the intended site in vivo and partially substituted for HCF173 to activate psbA translation. However, sPPR-activated translation did not respond to light. These results imply that HCF173 activates translation, at least in part, by sequestering the RNA it binds to maintain an accessible ribosome binding region, and that HCF173 is also required to regulate psbA translation in response to light. Translational activation can be added to the functions that can be programmed with sPPR proteins for synthetic biology applications in chloroplasts.

Indexed as

5' Untranslated RegionsArabidopsisArabidopsis ProteinsChloroplastsPhotosystem II Protein ComplexProtein BiosynthesisBinding SitesEukaryotic Initiation FactorsFluorescenceGene Expression Regulation, PlantLightRNA-Binding Proteins5' Untranslated RegionsArabidopsis ProteinsEukaryotic Initiation FactorsHCF173 protein, ArabidopsisPhotosystem II Protein ComplexpsbA protein, ArabidopsisRNA-Binding Proteins

Identifiers

PMID38593198
PMCPMC11449048
OpenAlexW4394623026

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.