Evidence map›Paper›PMID 38605034›Full record

ArticleNature communications2024

PRPF8-mediated dysregulation of hBrr2 helicase disrupts human spliceosome kinetics and 5´-splice-site selection causing tissue-specific defects.

Robert Atkinson, Maria Georgiou, Chunbo Yang, Katarzyna Szymanska, Albert Lahat, Elton J R Vasconcelos, Yanlong Ji, Marina Moya Molina, Joseph Collin, Rachel Queen and 22 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Neurodegenerative spliceosomopathies.Frontiers in cell and developmental biology · 2026
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Research Progress on the Relationship Between PRPF8 and Cancer.Current issues in molecular biology · 2025
    Review
  13. Article
  14. Addressing the tissue specificity of U5 snRNP spliceosomopathies.Frontiers in cell and developmental biology · 2025
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 10 institutions in 5 countries.

Robert Atkinson *Biosciences Institute, Newcastle University, Newcastle, UK.
Maria Georgiou *Biosciences Institute, Newcastle University, Newcastle, UK.
Chunbo Yang *Biosciences Institute, Newcastle University, Newcastle, UK.
Katarzyna Szymanska *Leeds Institute of Medical Research, University of Leeds, Leeds, UK.ORCID http://orcid.org/0000-0001-7736-5225
Albert Lahat *Department of Biosciences, Durham University, Durham, UK.
Elton J R Vasconcelos *Leeds Omics, University of Leeds, Leeds, UK.ORCID http://orcid.org/0000-0001-5130-6622
Yanlong JiMax-Planck-Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0002-9741-5119
Marina Moya MolinaBiosciences Institute, Newcastle University, Newcastle, UK.ORCID http://orcid.org/0000-0002-4787-3015
Joseph CollinBiosciences Institute, Newcastle University, Newcastle, UK.
Rachel QueenBiosciences Institute, Newcastle University, Newcastle, UK.
Birthe DorgauBiosciences Institute, Newcastle University, Newcastle, UK.ORCID http://orcid.org/0000-0003-4031-4402
Avril WatsonBiosciences Institute, Newcastle University, Newcastle, UK.ORCID http://orcid.org/0000-0001-5533-687X
Marzena Kurzawa-AkanbiBiosciences Institute, Newcastle University, Newcastle, UK.
Ross LawsElectron Microscopy Research Services, Newcastle University, Newcastle, UK.ORCID http://orcid.org/0000-0003-3241-2344
Abhijit SaxenaBiosciences Institute, Newcastle University, Newcastle, UK.
Chia Shyan BehBiosciences Institute, Newcastle University, Newcastle, UK.
Chileleko SiachisumoBiosciences Institute, Newcastle University, Newcastle, UK.
Franziska GoertlerDepartment of Informatics, University of Bergen, Bergen, Norway.ORCID http://orcid.org/0000-0003-2015-5766
Magdalena KarwatkaLeeds Institute of Medical Research, University of Leeds, Leeds, UK.
Tracey DaveyElectron Microscopy Research Services, Newcastle University, Newcastle, UK.
Chris F InglehearnLeeds Institute of Medical Research, University of Leeds, Leeds, UK.ORCID http://orcid.org/0000-0002-5143-2562
Martin McKibbinLeeds Institute of Medical Research, University of Leeds, Leeds, UK.
Reinhard LührmannMax-Planck-Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0003-3253-7518
David H SteelBiosciences Institute, Newcastle University, Newcastle, UK.
David J ElliottBiosciences Institute, Newcastle University, Newcastle, UK.ORCID http://orcid.org/0000-0002-6930-0699
Lyle ArmstrongBiosciences Institute, Newcastle University, Newcastle, UK.
Henning UrlaubMax-Planck-Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0003-1837-5233
Robin R AliCentre for Cell and Gene Therapy, Kings College London, London, UK.
Sushma-Nagaraja GrellscheidDepartment of Biosciences, Durham University, Durham, UK.
Colin A JohnsonLeeds Institute of Medical Research, University of Leeds, Leeds, UK. c.johnson@leeds.ac.uk.ORCID http://orcid.org/0000-0002-2979-8234
Sina Mozaffari-JovinMax-Planck-Institute for Multidisciplinary Sciences, Göttingen, Germany. sina.mozaffari-jovin@mpinat.mpg.de.ORCID http://orcid.org/0000-0003-4410-0460
Majlinda LakoBiosciences Institute, Newcastle University, Newcastle, UK. majlinda.lako@ncl.ac.uk.ORCID http://orcid.org/0000-0003-1327-8573
Newcastle University · GBUniversity of Leeds · GBBiotech Park · INDurham University · GBUniversitätsmedizin Göttingen · DEKing's College London · GBMashhad University of Medical Sciences · IRMax Planck Institute for Multidisciplinary SciencesNewcastle College · GBUniversity of Bergen · NO

Funding

National Centre for the Replacement, Refinement and Reduction of Animals in Research NC/C016106/1RCUK | Medical Research Council (MRC) MR/T017503/1
6 · The paper itself

Abstract

The carboxy-terminus of the spliceosomal protein PRPF8, which regulates the RNA helicase Brr2, is a hotspot for mutations causing retinitis pigmentosa-type 13, with unclear role in human splicing and tissue-specificity mechanism. We used patient induced pluripotent stem cells-derived cells, carrying the heterozygous PRPF8 c.6926 A > C (p.H2309P) mutation to demonstrate retinal-specific endophenotypes comprising photoreceptor loss, apical-basal polarity and ciliary defects. Comprehensive molecular, transcriptomic, and proteomic analyses revealed a role of the PRPF8/Brr2 regulation in 5'-splice site (5'SS) selection by spliceosomes, for which disruption impaired alternative splicing and weak/suboptimal 5'SS selection, and enhanced cryptic splicing, predominantly in ciliary and retinal-specific transcripts. Altered splicing efficiency, nuclear speckles organisation, and PRPF8 interaction with U6 snRNA, caused accumulation of active spliceosomes and poly(A)+ mRNAs in unique splicing clusters located at the nuclear periphery of photoreceptors. Collectively these elucidate the role of PRPF8/Brr2 regulatory mechanisms in splicing and the molecular basis of retinal disease, informing therapeutic approaches.

Indexed as

Retinitis PigmentosaRNA Splice SitesSpliceosomesAlternative SplicingDNA HelicasesHumansMutationProteomicsRNA-Binding ProteinsRNA, MessengerRNA, Small NuclearRNA SplicingDNA HelicasesPRPF8 protein, humanRNA-Binding ProteinsRNA, MessengerRNA, Small NuclearRNA Splice Sites

Identifiers

PMID38605034
PMCPMC11009313
OpenAlexW4394717503

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.