Evidence map›Paper›PMID 38605036›Full record

ArticleScientific data2024

Automated BigSMILES conversion workflow and dataset for homopolymeric macromolecules.

Sunho Choi, Joonbum Lee, Jangwon Seo, Sung Won Han, Sang Hyun Lee, Ji-Hun Seo, Junhee Seok

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sunho ChoiSchool of Electrical Engineering, Korea University, Seoul, South Korea.ORCID http://orcid.org/0000-0003-4027-8923
Joonbum LeeDepartment of Materials Science and Engineering, Korea University, Seoul, South Korea.
Jangwon SeoSchool of Electrical Engineering, Korea University, Seoul, South Korea.
Sung Won HanSchool of Industrial Management Engineering, Korea University, Seoul, South Korea.
Sang Hyun LeeSchool of Electrical Engineering, Korea University, Seoul, South Korea.ORCID http://orcid.org/0000-0001-5385-2061
Ji-Hun SeoDepartment of Materials Science and Engineering, Korea University, Seoul, South Korea.
Junhee SeokSchool of Electrical Engineering, Korea University, Seoul, South Korea. jseok14@korea.ac.kr.

Funding

National Research Foundation of Korea (NRF) NRF-2022R1A2C2004003
6 · The paper itself

Abstract

The simplified molecular-input line-entry system (SMILES) has been utilized in a variety of artificial intelligence analyses owing to its capability of representing chemical structures using line notation. However, its ease of representation is limited, which has led to the proposal of BigSMILES as an alternative method suitable for the representation of macromolecules. Nevertheless, research on BigSMILES remains limited due to its preprocessing requirements. Thus, this study proposes a conversion workflow of BigSMILES, focusing on its automated generation from SMILES representations of homopolymers. BigSMILES representations for 4,927,181 records are provided, thereby enabling its immediate use for various research and development applications. Our study presents detailed descriptions on a validation process to ensure the accuracy, interchangeability, and robustness of the conversion. Additionally, a systematic overview of utilized codes and functions that emphasizes their relevance in the context of BigSMILES generation are produced. This advancement is anticipated to significantly aid researchers and facilitate further studies in BigSMILES representation, including potential applications in deep learning and further extension to complex structures such as copolymers.

Identifiers

PMID38605036
PMCPMC11009387

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.