Evidence map›Paper›PMID 38622116›Full record

ArticleNature communications2024

A widely conserved protein Rof inhibits transcription termination factor Rho and promotes Salmonella virulence program.

Jing Zhang, Shuo Zhang, Wei Zhou, Xiang Zhang, Guanjin Li, Ruoxuan Li, Xingyu Lin, Ziying Chen, Fang Liu, Pan Shen and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jing Zhang *CAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Shuo Zhang *CAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Wei Zhou *Department of Pharmaceutical Sciences, Beijing Institute of Radiation Medicine, Beijing, China.
Xiang Zhang *The Fifth People's Hospital, Institutes of Biomedical Sciences, School of Public Health, School of Basic Medical Sciences, Fudan University, Shanghai, China.
Guanjin LiCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Ruoxuan LiCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Xingyu LinCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Ziying ChenCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Fang LiuCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Pan ShenDepartment of Pharmaceutical Sciences, Beijing Institute of Radiation Medicine, Beijing, China.
Xiaogen ZhouCollege of Information Engineering, Zhejiang University of Technology, Hangzhou, China.ORCID http://orcid.org/0000-0001-6839-1923
Yue GaoDepartment of Pharmaceutical Sciences, Beijing Institute of Radiation Medicine, Beijing, China. gaoyue@bmi.ac.cn.ORCID http://orcid.org/0000-0003-1131-5326
Zhenguo ChenThe Fifth People's Hospital, Institutes of Biomedical Sciences, School of Public Health, School of Basic Medical Sciences, Fudan University, Shanghai, China. zhenguochen@fudan.edu.cn.ORCID http://orcid.org/0000-0003-4748-9299
Yanjie ChaoCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China. yjchao@ips.ac.cn.ORCID http://orcid.org/0000-0002-5735-7954
Chengyuan WangCAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China. cywang@ips.ac.cn.ORCID http://orcid.org/0000-0002-8605-0716

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32270039Natural Science Foundation of Shanghai (Natural Science Foundation of Shanghai Municipality) 2019SHZDZX02
6 · The paper itself

Abstract

Transcription is crucial for the expression of genetic information and its efficient and accurate termination is required for all living organisms. Rho-dependent termination could rapidly terminate unwanted premature RNAs and play important roles in bacterial adaptation to changing environments. Although Rho has been discovered for about five decades, the regulation mechanisms of Rho-dependent termination are still not fully elucidated. Here we report that Rof is a conserved antiterminator and determine the cryogenic electron microscopy structure of Rho-Rof antitermination complex. Rof binds to the open-ring Rho hexamer and inhibits the initiation of Rho-dependent termination. Rof's N-terminal α-helix undergoes conformational changes upon binding with Rho, and is key in facilitating Rof-Rho interactions. Rof binds to Rho's primary binding site (PBS) and excludes Rho from binding with PBS ligand RNA at the initiation step. Further in vivo analyses in Salmonella Typhimurium show that Rof is required for virulence gene expression and host cell invasion, unveiling a physiological function of Rof and transcription termination in bacterial pathogenesis.

Indexed as

Rho FactorTranscription FactorsBacteriaGene Expression Regulation, BacterialSalmonella typhimuriumTranscription, GeneticVirulenceRho FactorTranscription Factors

Identifiers

PMID38622116
PMCPMC11018607

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.