Evidence map›Paper›PMID 38627019›Full record

ArticleRNA (New York, N.Y.)2024

Regulation of the

Rebecca J Haugen, Catherine Barnier, Nathan D Elrod, Hua Luo, Madeline K Jensen, Ping Ji, Craig A Smibert, Howard D Lipshitz, Eric J Wagner, P Lydia Freddolino and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. EFFICIENT RIBOSOMAL RNA DEPLETION FROMWellcome open research · 2025
    Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Rebecca J Haugen *Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Catherine Barnier *Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, USA.ORCID 0000-0001-7074-4011
Nathan D ElrodDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77550, USA.ORCID 0000-0003-1310-6026
Hua LuoDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5G 1M1, Canada.
Madeline K JensenDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York 14642, USA.ORCID 0000-0002-8855-597X
Ping JiDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York 14642, USA.
Craig A SmibertDepartment of Biochemistry, University of Toronto, Toronto, Ontario M5G 1M1, Canada.ORCID 0000-0001-6375-8669
Howard D LipshitzDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5G 1M1, Canada.ORCID 0000-0002-7372-4419
Eric J WagnerDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York 14642, USA.ORCID 0000-0003-0217-383X
P Lydia FreddolinoDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, USA.ORCID 0000-0002-5821-4226
Aaron C GoldstrohmDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA agoldstr@umn.edu.ORCID 0000-0002-1867-8763
University of Rochester Medical Center · USUniversity of Toronto · CAUniversity of Michigan · USUniversity of Minnesota · USThe University of Texas Medical Branch at Galveston · US

Funding

Building a unified framework for understanding bacterial gene regulation and chromosomal architectureR35GM128637 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lydia Petra Freddolino · 2018 to 2026
$3.6M
Request to Transfer R01GM105707-03 Novel regulatory mechanisms of Drosophila Pumilio and NanosR01GM105707 · NIGMS · UNIVERSITY OF MINNESOTA · PI GOLDSTROHM, AARON CHARLES · 2013 to 2022
$2.7M
Translational Control by Human Pumilio ProteinsR01GM150468 · NIGMS · UNIVERSITY OF MINNESOTA · PI Aaron Charles Goldstrohm · 2023 to 2026
$1.7M
mRNA regulatory functions of the Drosophila TRIM-NHL protein, BratR01GM145835 · NIGMS · UNIVERSITY OF MINNESOTA · PI GOLDSTROHM, AARON CHARLES · 2022 to 2025
$1.4M
NIGMS NIH HHS R01 GM105707NIGMS NIH HHS R01 GM145835NIGMS NIH HHS R01 GM150468NIGMS NIH HHS R35 GM128637
6 · The paper itself

Abstract

The sequence-specific RNA-binding protein Pumilio (Pum) controls

Indexed as

Drosophila ProteinsRNA-Binding ProteinsTranscriptomeAnimalsBinding SitesDrosophilaDrosophila melanogasterGene Expression Regulation, DevelopmentalProtein BindingRibonucleasesRNA, MessengerCCR4 protein, DrosophilaDrosophila ProteinsNOT1 protein, Drosophilapum protein, DrosophilaRibonucleasesRNA-Binding ProteinsRNA, MessengerCCR4–NOTdeadenylasePumiliorepressionRNA-binding proteins

Identifiers

PMID38627019
PMCPMC11182014
OpenAlexW4394856382

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.