Evidence map›Paper›PMID 38633082›Full record

ArticleBiomedical optics express2024

Optical coherence tomography for multicellular tumor spheroid category recognition and drug screening classification via multi-spatial-superficial-parameter and machine learning.

Feng Yan, Bornface Mutembei, Trisha Valerio, Gokhan Gunay, Ji-Hee Ha, Qinghao Zhang, Chen Wang, Ebenezer Raj Selvaraj Mercyshalinie, Zaid A Alhajeri, Fan Zhang and 7 more

Abstract read
In one paragraph

Article in Biomedical optics express, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Feng YanStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.ORCID https://orcid.org/0000-0001-9926-7554
Bornface MutembeiStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Trisha ValerioStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Gokhan GunayStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Ji-Hee HaDepartment of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Qinghao ZhangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Chen WangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.ORCID https://orcid.org/0000-0003-4645-3227
Ebenezer Raj Selvaraj MercyshalinieStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Zaid A AlhajeriStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Fan ZhangDepartment of Radiology, School of Medicine, University of Washington, Seattle, WA 98195, USA.
Lauren E DockeryStephenson Cancer Center, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Xinwei LiDepartment of Electrical and Electronic Engineering, University of Nottingham, Nottingham NG7 2RD, United Kingdom.
Ronghao LiuSchool of Computer Science and Technology, Shandong Jianzhu University, Jinan 250100, China.
Danny N DhanasekaranDepartment of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Handan AcarStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Wei R ChenStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.
Qinggong TangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA.ORCID https://orcid.org/0000-0001-9499-5384

Funding

Tracking and Evaluation CoreU54GM104938 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JUDITH A JAMES · 2013 to 2026
$68.2M
Tissue Pathology Shared ResourceP30CA225520 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ROBERT S. MANNEL · 2018 to 2026
$27.1M
TUMOR RESISTANCE MECHANISMS TO ANTI-VEGF THERAPY IN PROSTATE CANCER (Sukyung Woo)P20GM103639 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI DHANASEKARAN, DANNY N. · 2012 to 2022
$21.3M
Use of 3D Quantitative Optical Methods to Optimize Mebendazole Treatment of Ovarian CancerP20GM135009 · NIGMS · UNIVERSITY OF OKLAHOMA · PI Javier Antonio Jo · 2022 to 2026
$13.6M
Automatic Wide-Field Optical Coherence Tomography for Assessment of Transplant Kidney ViabilityR01DK133717 · NIDDK · UNIVERSITY OF MASSACHUSETTS AMHERST · PI POTTER, STEVEN, TANG, QINGGONG · 2022 to 2025
$2.5M
Potentiating a systemic antitumor response by interstitial localized ablative immunotherapy to synergize with immune checkpoint therapy for metastatic pancreatic tumorsR01CA269897 · NCI · UNIVERSITY OF OKLAHOMA · PI Wei R. Chen, MIN LI · 2022 to 2026
$2.5M
NCI NIH HHS P30 CA225520NCI NIH HHS R01 CA269897NIDDK NIH HHS R01 DK133717NIGMS NIH HHS P20 GM103639NIGMS NIH HHS P20 GM135009NIGMS NIH HHS U54 GM104938
6 · The paper itself

Abstract

Optical coherence tomography (OCT) is an ideal imaging technique for noninvasive and longitudinal monitoring of multicellular tumor spheroids (MCTS). However, the internal structure features within MCTS from OCT images are still not fully utilized. In this study, we developed cross-statistical, cross-screening, and composite-hyperparameter feature processing methods in conjunction with 12 machine learning models to assess changes within the MCTS internal structure. Our results indicated that the effective features combined with supervised learning models successfully classify OVCAR-8 MCTS culturing with 5,000 and 50,000 cell numbers, MCTS with pancreatic tumor cells (Panc02-H7) culturing with the ratio of 0%, 33%, 50%, and 67% of fibroblasts, and OVCAR-4 MCTS treated by 2-methoxyestradiol, AZD1208, and R-ketorolac with concentrations of 1, 10, and 25 µM. This approach holds promise for obtaining multi-dimensional physiological and functional evaluations for using OCT and MCTS in anticancer studies.

Identifiers

PMID38633082
PMCPMC11019711

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.