Evidence map›Paper›PMID 38637112›Full record

ArticleRMD open2024

Polygenic Risk Score Predicts Earlier-Onset Adult Systemic Lupus Erythematosus and First-Year Renal Diseases in a Taiwanese Cohort.

Yen-Ju Chen, Tzu-Hung Hsiao, Ying-Cheng Lin, Wen-Juei Jeng, Chien-Lin Mao, Chia-Yi Wei, Yi-Chung Hsieh, Chih-Jen Huang, Mei-Hung Pan, I-Chieh Chen and 3 more

Open access · goldAbstract read
In one paragraph

Article in RMD open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 5 countries.

Yen-Ju ChenDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.ORCID 0000-0002-9450-9144
Tzu-Hung HsiaoDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.ORCID 0000-0003-0365-9970
Ying-Cheng LinDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan.
Wen-Juei JengDivision of Hepatogastroenterology, Chang Gung Memorial Hospital, Taoyuan City, Taiwan.
Chien-Lin MaoDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.
Chia-Yi WeiDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.
Yi-Chung HsiehDivision of Hepatogastroenterology, Chang Gung Memorial Hospital, Taoyuan City, Taiwan.
Chih-Jen HuangGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Mei-Hung PanGenomics Research Center, Academia Sinica, Taipei, Taiwan.
I-Chieh ChenDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.ORCID 0000-0002-8345-5304
Ching-Heng LinDepartment of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan.
Yi-Ming Chen *Department of Medical Research, Taichung Veterans General Hospital, Taichung, Taiwan hiyang@gate.sinica.edu.tw ymchen1@vghtc.gov.tw.ORCID 0000-0001-7593-3065
Hwai-I Yang *Institute of Clinical Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan hiyang@gate.sinica.edu.tw ymchen1@vghtc.gov.tw.
National Yang Ming Chiao Tung University · TWChang Gung University · TWFu Jen Catholic University · TWGenomics Research Center, Academia Sinica · TWMemorial Hospital of South Bend · USTaichung Veterans General Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThis study aimed to develop a predictive model using polygenic risk score (PRS) to forecast renal outcomes for adult systemic lupus erythematosus (SLE) in a Taiwanese population.

methodsPatients with SLE (n=2782) and matched non-SLE controls (n=11 128) were genotyped using Genome-Wide TWB 2.0 single-nucleotide polymorphism (SNP) array. PRS models (C+T, LDpred2, Lassosum, PRSice-2, PRS-continuous shrinkage (CS)) were constructed for predicting SLE susceptibility. Logistic regression was assessed for C+T-based PRS association with renal involvement in patients with SLE.

resultsIn the training set, C+T-based SLE-PRS, only incorporating 27 SNPs, outperformed other models with area under the curve (AUC) values of 0.629, surpassing Lassosum (AUC=0.621), PRSice-2 (AUC=0.615), LDpred2 (AUC=0.609) and PRS-CS (AUC=0.602). Additionally, C+T-based SLE-PRS demonstrated consistent predictive capacity in the testing set (AUC=0.620). Individuals in the highest quartile exhibited earlier SLE onset (39.06 vs 44.22 years, p<0.01), higher Systemic Lupus Erythematosus Disease Activity Index scores (3.00 vs 2.37, p=0.04), elevated risks of renal involvement within the first year of SLE diagnosis, including WHO class III-IV lupus nephritis (OR 2.36, 95% CI 1.47 to 3.80, p<0.01), estimated glomerular filtration rate <60 mL/min/1.73m

conclusionsPRS of SLE is associated with earlier onset, renal involvement within the first year of SLE diagnosis and seropositivity in Taiwanese patients. Integrating PRS with clinical decision-making may enhance lupus nephritis screening and early treatment to improve renal outcomes in patients with SLE.

Indexed as

Lupus Erythematosus, SystemicLupus NephritisAdultGenetic Risk ScoreGenotypeHumansKidneyLupus NephritisPolymorphism, GeneticSystemic Lupus Erythematosus

Identifiers

PMID38637112
PMCPMC11146410
OpenAlexW4394912102

What Socratic holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.