Evidence map›Paper›PMID 38641846›Full record

ArticleBMC medical genomics2024

Genetic underpinnings explored: OPA1 deletion and complex phenotypes on chromosome 3q29.

Ethan Hung-Hsi Wang, Pei-Hsuan Lin, Pei-Liang Wu, Eugene Yu-Chuan Kang, Laura Liu, Lung-Kun Yeh, Kuan-Jen Chen, Meng-Chang Hsiao, Nan-Kai Wang

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 0 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Ethan Hung-Hsi WangDepartment of Ophthalmology, Edward S. Harkness Eye Institute, Columbia University, New York, NY, USA.
Pei-Hsuan LinDepartment of Ophthalmology, Edward S. Harkness Eye Institute, Columbia University, New York, NY, USA.
Pei-Liang WuDepartment of Ophthalmology, Edward S. Harkness Eye Institute, Columbia University, New York, NY, USA.
Eugene Yu-Chuan KangDepartment of Ophthalmology, Edward S. Harkness Eye Institute, Columbia University, New York, NY, USA.ORCID 0000-0001-6814-6530
Laura LiuDepartment of Ophthalmology, Linkou Medical Center, Chang Gung Memorial Hospital, Taoyuan, Taiwan.ORCID 0000-0002-3171-3172
Lung-Kun YehCollege of Medicine, Chang Gung University, Taoyuan, Taiwan.
Kuan-Jen ChenCollege of Medicine, Chang Gung University, Taoyuan, Taiwan.
Meng-Chang HsiaoDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, USA.
Nan-Kai WangDepartment of Ophthalmology, Edward S. Harkness Eye Institute, Columbia University, New York, NY, USA. wang.nankai@gmail.com.ORCID 0000-0002-6277-9879
Chang Gung University · TWNational Taiwan University · TWFlorida State University · USVanderbilt University Medical Center · US

Funding

Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Reprogramming the metabolome to overcome the genetic heterogeneity in retinitis pigmentosaR01EY031354 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WANG, NAN-KAI · 2020 to 2024
$2.0M
NEI NIH HHS P30 EY019007NEI NIH HHS R01 EY031354NIH HHS R01EY031354
6 · The paper itself

Abstract

backgroundCopy number variations (CNVs) have emerged as significant contributors to the elusive genetic causality of inherited eye diseases. In this study, we describe a case with optic atrophy and a brain aneurysm, in which a de novo CNV 3q29 deletion was identified. CASE PRESENTATION: A 40-year-old female patient was referred to our department after undergoing aneurysm transcatheter arterial embolization for a brain aneurysm. She had no history of systemic diseases, except for unsatisfactory best-corrected visual acuity (BCVA) since elementary school. Electrophysiological tests confirmed the findings in retinal images, indicating optic nerve atrophy. Chromosomal microarray analysis revealed a de novo deletion spanning 960 kb on chromosome 3q29, encompassing OPA1 and six neighboring genes. Unlike previously reported deletions in this region associated with optic atrophy, neuropsychiatric disorders, and obesity, this patient displayed a unique combination of optic atrophy and a brain aneurysm. However, there is no causal relationship between the brain aneurysm and the CNV.

conclusionIn conclusion, the optic atrophy is conclusively attributed to the OPA1 deletion, and the aneurysm could be a coincidental association. The report emphasizes the likelihood of underestimating OPA1 deletions due to sequencing technology limitations. Recognizing these constraints, healthcare professionals must acknowledge these limitations and consistently search for OPA1 variants/deletions in Autosomal Dominant Optic Atrophy (ADOA) patients with negative sequencing results. This strategic approach ensures a more comprehensive exploration of copy-number variations, ultimately enhancing diagnostic precision in the field of genetic disorders.

Indexed as

Intracranial AneurysmOptic AtrophyAdultChromosomesDNA Copy Number VariationsFemaleGTP PhosphohydrolasesHumansMutationPedigreePhenotypeGTP PhosphohydrolasesOPA1 protein, humanAutosomal dominant optic atrophyBrain aneurysmExome sequencingMicroarrayOPA1

Identifiers

PMID38641846
PMCPMC11031983
OpenAlexW4394953505

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.