Evidence map›Paper›PMID 38669469›Full record

ArticleACS nano2024

Cancer Methylation Biomarker Detection in an Automated, Portable, Multichannel Magnetofluidic Platform.

Alexander C Hasnain, Alejandro Stark, Alexander Y Trick, Ke Ma, Kuangwen Hsieh, Yulan Cheng, Stephen J Meltzer, Tza-Huei Wang

Open access · greenAbstract read
In one paragraph

Article in ACS nano, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Alexander C HasnainDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID 0009-0000-5875-7266
Alejandro StarkDepartment of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID 0000-0003-0625-5605
Alexander Y TrickDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.
Ke MaDivision of Gastroenterology and Hepatology, Department of Medicine and Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, United States.
Kuangwen HsiehDepartment of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID 0000-0003-3730-4406
Yulan ChengDivision of Gastroenterology and Hepatology, Department of Medicine and Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, United States.
Stephen J MeltzerDivision of Gastroenterology and Hepatology, Department of Medicine and Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, United States.
Tza-Huei WangDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID 0000-0002-3540-9354
Johns Hopkins University · US

Funding

Optimizing Ultrasensitive DNA methylation detection for lung cancer and other malignanciesU2CCA271885 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JAMES G. HERMAN · 2022 to 2026
$4.2M
Academic-Industrial Partnership for Non-invasive Barrett's Esophagus DetectionR01DK118250 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J · 2018 to 2022
$3.8M
Facile screening for esophageal cancer in LMICsUH3CA211457 · NCI · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J, WANG, TZA-HUEI JEFF · 2019 to 2021
$2.8M
Point-of-Care Diagnosis of Esophageal Cancer in LMICsU01CA279866 · NCI · JOHNS HOPKINS UNIVERSITY · PI Stephen J Meltzer, Tza-Huei Jeff Wang · 2023 to 2026
$2.4M
Development of a low-cost epigenetic screening assay for Pap specimen-based detection of early-stage ovarian cancer in high-risk womenR01CA260628 · NCI · JOHNS HOPKINS UNIVERSITY · PI PISANIC II, THOMAS RUSSELL, SHIH, IE-MING · 2021 to 2025
$2.1M
A low-cost, multiplexed digital high resolution melt platform for DNA methylation-based detection and identification of cancers in liquid biopsiesR33CA272321 · NCI · JOHNS HOPKINS UNIVERSITY · PI PISANIC II, THOMAS RUSSELL, WANG, TZA-HUEI JEFF · 2022 to 2024
$1.2M
Facile screening for esophageal cancer in LMICsUG3CA211457 · NCI · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J, WANG, TZA-HUEI JEFF · 2017 to 2018
$861k
Diagnosis of Esophageal Squamous Cell Carcinoma in Low-Income CountriesR41CA261376 · NCI · CAPSULOMICS, LLC · PI LUNZ, DANIEL GREGORY · 2021 to 2021
$400k
NCI NIH HHS R01 CA260628NCI NIH HHS R33 CA272321NCI NIH HHS R41 CA261376NCI NIH HHS U01 CA279866NCI NIH HHS U2C CA271885NCI NIH HHS UG3 CA211457NCI NIH HHS UH3 CA211457NIDDK NIH HHS R01 DK118250
6 · The paper itself

Abstract

Early detection of cancer is critical to improving clinical outcomes, especially in territories with limited healthcare resources. DNA methylation biomarkers have shown promise in early cancer detection, but typical workflows require highly trained personnel and specialized equipment for manual and lengthy processing, limiting use in resource-constrained areas. As a potential solution, we introduce the Automated Cartridge-based Cancer Early Screening System (ACCESS), a compact, portable, multiplexed, automated platform that performs droplet magnetofluidic- and methylation-specific qPCR-based assays for the detection of DNA methylation cancer biomarkers. Development of ACCESS focuses on esophageal cancer, which is among the most prevalent cancers in low- and middle-income countries with extremely low survival rates. Upon implementing detection assays for two esophageal cancer methylation biomarkers within ACCESS, we demonstrated successful detection of both biomarkers from esophageal tumor tissue samples from eight esophageal cancer patients while showing specificity in paired normal esophageal tissue samples. These results illustrate ACCESS's potential as an amenable epigenetic diagnostic tool for resource-constrained areas toward early detection of esophageal cancer and potentially other malignancies.

Indexed as

Biomarkers, TumorDNA MethylationEsophageal NeoplasmsAutomationEarly Detection of CancerHumansMicrofluidic Analytical TechniquesBiomarkers, Tumorbiomarkerscancerdiagnosticsepigeneticsmagnetofluidicsmethylationpoint-of-care

Identifiers

PMID38669469
PMCPMC12013524
OpenAlexW4395661291

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.