Evidence map›Paper›PMID 38686810›Full record

ArticleNucleic acids research2024

The RBPome of influenza A virus NP-mRNA reveals a role for TDP-43 in viral replication.

Maud Dupont, Tim Krischuns, Quentin Giai Gianetto, Sylvain Paisant, Stefano Bonazza, Jean-Baptiste Brault, Thibaut Douché, Benoît Arragain, Alberto Florez-Prada, Joel I Perez-Perri and 6 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. TDP-43: [GU]-ardian of the transcriptome.Molecular neurodegeneration · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Maud DupontInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.
Tim KrischunsInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.
Quentin Giai GianettoInstitut Pasteur, Université Paris Cité, CNRS UAR2024, Proteomics Platform, Mass Spectrometry for Biology, Paris, France.
Sylvain PaisantInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.
Stefano BonazzaWellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, BelfastBT9 7BL, Northern Ireland.
Jean-Baptiste BraultInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.
Thibaut DouchéInstitut Pasteur, Université Paris Cité, CNRS UAR2024, Proteomics Platform, Mass Spectrometry for Biology, Paris, France.
Benoît ArragainEuropean Molecular Biology Laboratory, 38042Grenoble, France.
Alberto Florez-PradaInstitut de Biologie Structurale, UMR5075 CEA-CNRS-UGA, 38042Grenoble, France.
Joel I Perez-PerriEuropean Molecular Biology Laboratory, 69117Heidelberg, Germany.
Matthias W HentzeEuropean Molecular Biology Laboratory, 69117Heidelberg, Germany.
Stephen CusackEuropean Molecular Biology Laboratory, 38042Grenoble, France.ORCID 0000-0002-9324-0796
Mariette MatondoInstitut Pasteur, Université Paris Cité, CNRS UAR2024, Proteomics Platform, Mass Spectrometry for Biology, Paris, France.
Catherine IselInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.
David G CourtneyWellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, BelfastBT9 7BL, Northern Ireland.ORCID 0000-0002-0677-1194
Nadia NaffakhInstitut Pasteur, Université Paris Cité, CNRS UMR3569, RNA Biology and Influenza Viruses, Paris, France.ORCID 0000-0002-0424-0277

Funding

Agence Nationale de la Recherche ANR-18-CE18-0028European Research Council Fellowship PTFLU 949506Institut Pasteur, ParisMarie-Skłodowska Curie Global Fellowship MSCA-IF-GF:747810
6 · The paper itself

Abstract

Genome-wide approaches have significantly advanced our knowledge of the repertoire of RNA-binding proteins (RBPs) that associate with cellular polyadenylated mRNAs within eukaryotic cells. Recent studies focusing on the RBP interactomes of viral mRNAs, notably SARS-Cov-2, have revealed both similarities and differences between the RBP profiles of viral and cellular mRNAs. However, the RBPome of influenza virus mRNAs remains unexplored. Herein, we identify RBPs that associate with the viral mRNA encoding the nucleoprotein (NP) of an influenza A virus. Focusing on TDP-43, we show that it binds several influenza mRNAs beyond the NP-mRNA, and that its depletion results in lower levels of viral mRNAs and proteins within infected cells, and a decreased yield of infectious viral particles. We provide evidence that the viral polymerase recruits TDP-43 onto viral mRNAs through a direct interaction with the disordered C-terminal domain of TDP-43. Notably, other RBPs found to be associated with influenza virus mRNAs also interact with the viral polymerase, which points to a role of the polymerase in orchestrating the assembly of viral messenger ribonucleoproteins.

Indexed as

DNA-Binding ProteinsInfluenza A virusRNA-Binding ProteinsRNA, MessengerRNA, ViralVirus ReplicationAnimalsHEK293 CellsHumansNucleocapsid ProteinsProtein BindingViral Core ProteinsDNA-Binding ProteinsNP protein, Influenza A virusNucleocapsid ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ViralTARDBP protein, humanViral Core Proteins

Identifiers

PMID38686810
PMCPMC11229366

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.