Evidence map›Paper›PMID 38697108›Full record

ArticleDevelopmental cell2024

Notochord segmentation in zebrafish controlled by iterative mechanical signaling.

Susan Wopat, Priyom Adhyapok, Bijoy Daga, Janice M Crawford, James Norman, Jennifer Bagwell, Brianna Peskin, Indrasen Magre, Stephanie M Fogerson, Daniel S Levic and 4 more

Abstract read
In one paragraph

Article in Developmental cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Susan WopatDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Priyom AdhyapokDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Bijoy DagaDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Janice M CrawfordDepartment of Biology, Duke University, Durham, NC 27708, USA.
James NormanDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Jennifer BagwellDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Brianna PeskinDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Indrasen MagreDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Stephanie M FogersonDepartment of Biology, Duke University, Durham, NC 27708, USA.
Daniel S LevicDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Stefano Di TaliaDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.
Daniel P KiehartDepartment of Biology, Duke University, Durham, NC 27708, USA.
Patrick CharbonneauDepartment of Chemistry, Duke University, Durham, NC 27708, USA; Department of Physics, Duke University, Durham, NC 27708, USA. Electronic address: patrick.charbonneau@duke.edu.
Michel BagnatDepartment of Cell Biology, Duke University, Durham, NC 27710, USA. Electronic address: michel.bagnat@duke.edu.

Funding

Morphogenesis: Biophysics and Genetics of Dorsal ClosureR35GM127059 · NIGMS · DUKE UNIVERSITY · PI DANIEL PETER KIEHART · 2018 to 2026
$4.5M
Regulation of notochord vacuole biogenesis: investigating its role in spine formation and IVD BiologyR01AR083346 · NIAMS · DUKE UNIVERSITY · PI Michel Bagnat · 2024 to 2026
$1.6M
Investigating mechanisms of cell volume regulation in the zebrafish notochordR01GM150666 · NIGMS · DUKE UNIVERSITY · PI Michel Bagnat · 2024 to 2026
$1.3M
Investigating the role of notochord segmentation in spine morphogenesisF31AR070641 · NIAMS · DUKE UNIVERSITY · PI WOPAT, SUSAN E · 2018 to 2020
$106k
NIAMS NIH HHS F31 AR070641NIAMS NIH HHS R01 AR083346NIGMS NIH HHS R01 GM150666NIGMS NIH HHS R35 GM127059
6 · The paper itself

Abstract

In bony fishes, patterning of the vertebral column, or spine, is guided by a metameric blueprint established in the notochord sheath. Notochord segmentation begins days after somitogenesis concludes and can occur in its absence. However, somite patterning defects lead to imprecise notochord segmentation, suggesting that these processes are linked. Here, we identify that interactions between the notochord and the axial musculature ensure precise spatiotemporal segmentation of the zebrafish spine. We demonstrate that myoseptum-notochord linkages drive notochord segment initiation by locally deforming the notochord extracellular matrix and recruiting focal adhesion machinery at these contact points. Irregular somite patterning alters this mechanical signaling, causing non-sequential and dysmorphic notochord segmentation, leading to altered spine development. Using a model that captures myoseptum-notochord interactions, we find that a fixed spatial interval is critical for driving sequential segment initiation. Thus, mechanical coupling of axial tissues facilitates spatiotemporal spine patterning.

Indexed as

Body PatterningNotochordSomitesSpineZebrafishZebrafish ProteinsAnimalsEmbryo, NonmammalianExtracellular MatrixGene Expression Regulation, DevelopmentalSignal TransductionZebrafish Proteinsextracellular matrixmorphogenesismyoseptanotochordsegmentationsomitestissue mechanicszebrafish

Identifiers

PMID38697108
PMCPMC11265980

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.