Evidence mapPaperPMID 38697122Full record

ArticleCell genomics2024

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures.

Venugopalan D Nair, Hanna Pincas, Gregory R Smith, Elena Zaslavsky, Yongchao Ge, Mary Anne S Amper, Mital Vasoya, Maria Chikina, Yifei Sun, Archana Natarajan Raja and 14 more

Abstract read
In one paragraph

Article in Cell genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Molecular Effects of Physical Activity and Body Composition: A Systematic Review and Meta-Analysis.International journal of environmental research and public health · 2025
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Venugopalan D NairDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: venugopalan.nair@mountsinai.org.
Hanna PincasDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Gregory R SmithDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Elena ZaslavskyDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Yongchao GeDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Mary Anne S AmperDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Mital VasoyaDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Maria ChikinaDepartment of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Yifei SunDepartment of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Archana Natarajan RajaDepartment of Medicine, Stanford School of Medicine, Stanford, CA 94305, USA.
Weiguang MaoDepartment of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Nicole R GayDepartment of Genetics, Stanford School of Medicine, Stanford, CA 94305, USA.
Karyn A EsserDepartment of Physiology and Aging, University of Florida, Gainesville, FL 32610, USA.
Kevin S SmithDepartments of Pathology and Genetics, Stanford School of Medicine, Stanford, CA 94305, USA.
Bingqing ZhaoDepartment of Genetics, Stanford School of Medicine, Stanford, CA 94305, USA.
Laurens WielDepartment of Medicine, Stanford School of Medicine, Stanford, CA 94305, USA.
Aditya SinghDepartment of Medicine, Stanford School of Medicine, Stanford, CA 94305, USA.
Malene E LindholmDepartment of Medicine, Stanford School of Medicine, Stanford, CA 94305, USA.
David AmarDepartment of Medicine, Stanford School of Medicine, Stanford, CA 94305, USA.
Stephen MontgomeryDepartments of Pathology and Genetics, Stanford School of Medicine, Stanford, CA 94305, USA.
Michael P SnyderDepartment of Genetics, Stanford School of Medicine, Stanford, CA 94305, USA.
Martin J WalshDepartment of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Stuart C SealfonDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: stuart.sealfon@mssm.edu.
MoTrPAC Study Group

Funding

PAGES: Physical Activity Genomics, Epigenomics/transcriptomics SiteU24DK112331 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · 2022 to 2025
$12.7M
ProMoTr: A Proteomics Center for MoTrPACU24DK112349 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · 2022 to 2025
$10.8M
A Biochemical Roadmap of Exercise SignalingU24DK112340 · NIDDK · BROAD INSTITUTE, INC. · 2022 to 2025
$10.2M
Pennington MoTrPAC AdultsU01AR071160 · NIAMS · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI Tuomo Rankinen, Eric Ravussin · 2022 to 2022
$7.7M
Stanford/Salk MoTrPAC Site for Genomes, Epigenomes and TranscriptomesU24DK112348 · NIDDK · STANFORD UNIVERSITY · 2022 to 2025
$7.4M
The Exercise and Physical Activity Collaborative Team (ExPACT): a Proposed MoTrPAC Clinical CenterU01AR071133 · NIAMS · BALL STATE UNIVERSITY · PI Thomas W Buford, Bret H Goodpaster · 2022 to 2022
$7.3M
MoTrPAC Consortium Coordinating CenterU24AR071113 · NIAMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · 2022 to 2025
$7.2M
Molecular Transducers of Physical Activity Consortium - Colorado Clinical CenterU01AR071124 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI Wendy M Kohrt · 2022 to 2022
$6.5M
Michigan MoTrPAC Chemical Analysis Site (MiCAS)U24DK112342 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · 2022 to 2025
$5.0M
MoTrPAC DXA Quality ControlU01AR071128 · NIAMS · DUKE UNIVERSITY · 2022 to 2025
$4.5M
Georgia Comprehensive Metabolomics and Proteomics Unit for MoTrPACU24DK112341 · NIDDK · EMORY UNIVERSITY · 2022 to 2025
$4.1M
University of Texas Adult Clinical CenterU01AR071150 · NIAMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Darpan I. Patel · 2022 to 2022
$3.7M
NIAMS NIH HHS U01 AR071124NIAMS NIH HHS U01 AR071128NIAMS NIH HHS U01 AR071130NIAMS NIH HHS U01 AR071133NIAMS NIH HHS U01 AR071150NIAMS NIH HHS U01 AR071158NIAMS NIH HHS U01 AR071160NIAMS NIH HHS U24 AR071113NIA NIH HHS U01 AG055133NIA NIH HHS U01 AG055135NIA NIH HHS U01 AG055137NIDDK NIH HHS U24 DK112326NIDDK NIH HHS U24 DK112331NIDDK NIH HHS U24 DK112340NIDDK NIH HHS U24 DK112341NIDDK NIH HHS U24 DK112342NIDDK NIH HHS U24 DK112348NIDDK NIH HHS U24 DK112349NIH HHS U24 OD026629
6 · The paper itself

Abstract

Regular exercise has many physical and brain health benefits, yet the molecular mechanisms mediating exercise effects across tissues remain poorly understood. Here we analyzed 400 high-quality DNA methylation, ATAC-seq, and RNA-seq datasets from eight tissues from control and endurance exercise-trained (EET) rats. Integration of baseline datasets mapped the gene location dependence of epigenetic control features and identified differing regulatory landscapes in each tissue. The transcriptional responses to 8 weeks of EET showed little overlap across tissues and predominantly comprised tissue-type enriched genes. We identified sex differences in the transcriptomic and epigenomic changes induced by EET. However, the sex-biased gene responses were linked to shared signaling pathways. We found that many G protein-coupled receptor-encoding genes are regulated by EET, suggesting a role for these receptors in mediating the molecular adaptations to training across tissues. Our findings provide new insights into the mechanisms underlying EET-induced health benefits across organs.

Indexed as

Physical Conditioning, AnimalTranscriptomeAdaptation, PhysiologicalAnimalsDNA MethylationEpigenesis, GeneticEpigenomicsFemaleMaleOrgan SpecificityRatsRats, Sprague-DawleyATAC-seqchromatin accessibilityDNA methylationendurance trainingGPCRRNA-seqRRBSsex differencestissue specificitytranscriptome

Identifiers

PMID38697122
PMCPMC11228891

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.