Evidence map›Paper›PMID 38700789›Full record

ArticleJournal of cancer research and clinical oncology2024

Germline findings in cancer predisposing genes from a small cohort of chordoma patients.

Margarita Raygada, Liny John, Anne Liu, Julianne Schultz, B J Thomas, Donna Bernstein, Markku Miettinen, Mark Raffeld, Liqiang Xi, Manoj Tyagi and 5 more

Abstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Margarita RaygadaPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA. Raygadam@mail.nih.gov.
Liny JohnPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Anne LiuPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Julianne SchultzPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
B J ThomasPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Donna BernsteinPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Markku MiettinenLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Mark RaffeldLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Liqiang XiLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Manoj TyagiLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Kenneth AldapeLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
John GlodPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Karlyne M ReillyPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Brigitte C WidemannPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Mary Frances WedekindPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA. maryfrances.wedekindmalone@nih.gov.

Funding

NCI COMPASS-Comprehensive Oncologic Molecular Pathology and Sequencing ServiceZIDBC011959 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI XI, LIQIANG · 2020 to 2025
$46.2M
MyPART: My Pediatric and Adult Rare Tumor Network - CuresZIABC011852 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WIDEMANN, BRIGITTE · 2020 to 2025
$39.2M
Genreal Surgical PathologyZIDBC011291 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MIETTINEN, MARKKU · 2010 to 2025
$30.3M
Therapies for patients with rare tumors and genetic tumor predispositionZIASC010354 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI WIDEMANN, BRIGITTE · 2009 to 2025
$19.2M
Biology and molecular vulnerabilities in SMARCB1-deficient tumorsZIABC012152 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REILLY, KARLYNE M · 2023 to 2025
$1.1M
Early Detection of Cancer Patients with Germline SDH DeficiencyZIABC012072 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GLOD, JOHN · 2022 to 2025
$992k
6 · The paper itself

Abstract

introductionChordoma is a rare slow-growing tumor that occurs along the length of the spinal axis and arises from primitive notochordal remnants (Stepanek et al., Am J Med Genet 75:335-336, 1998). Most chordomas are sporadic, but a small percentage of cases are due to hereditary cancer syndromes (HCS) such as tuberous sclerosis 1 and 2 (TSC1/2), or constitutional variants in the gene encoding brachyury T (TBXT) (Pillay et al., Nat Genet 44:1185-1187, 2012; Yang et al., Nat Genet 41:1176-1178, 2009). PURPOSE: The genetic susceptibility of these tumors is not well understood; there are only a small number of studies that have performed germline genetic testing in this population.

methodsWe performed germline genetic in chordoma patients using genomic DNA extracted by blood or saliva.

conclusionWe report here a chordoma cohort of 24 families with newly found germline genetic mutations in cancer predisposing genes. We discuss implications for genetic counseling, clinical management, and universal germline genetic testing for cancer patients with solid tumors.

Indexed as

ChordomaFetal ProteinsGenetic Predisposition to DiseaseGerm-Line MutationT-Box Domain ProteinsAdolescentAdultAgedBrachyury ProteinCohort StudiesFemaleGenetic TestingHumansMaleMiddle AgedYoung AdultBrachyury ProteinFetal ProteinsT-Box Domain ProteinsChordomaGenetic counselingGermlineHereditaryPredisposition

Identifiers

PMID38700789
PMCPMC11068663

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.