Evidence map›Paper›PMID 38713017›Full record

ArticleJournal of proteome research2025

Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags.

Trenton M Peters-Clarke, Yiran Liang, Keaton L Mertz, Kenneth W Lee, Michael S Westphall, Joshua D Hinkle, Graeme C McAlister, John E P Syka, Ryan T Kelly, Joshua J Coon

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Plasma-Derived Extracellular Vesicle Proteomics.Journal of proteome research · 2025
    Review
  3. Article
  4. Review
  5. Single-nucleus proteomics identifies regulators of protein transport.bioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Trenton M Peters-ClarkeDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.ORCID 0000-0002-9153-2525
Yiran LiangDepartment of Chemistry, Brigham Young University, Provo, Utah 84602, United States.ORCID 0000-0002-8071-9984
Keaton L MertzDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Kenneth W LeeDepartment of Biomolecular Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.ORCID 0000-0003-4477-4553
Michael S WestphallDepartment of Biomolecular Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Joshua D HinkleThermo Fisher Scientific, San Jose, California 95134, United States.
Graeme C McAlisterThermo Fisher Scientific, San Jose, California 95134, United States.
John E P SykaThermo Fisher Scientific, San Jose, California 95134, United States.
Ryan T KellyDepartment of Chemistry, Brigham Young University, Provo, Utah 84602, United States.
Joshua J CoonDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.ORCID 0000-0002-0004-8253

Funding

Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
NHGRI NIH HHS T32 HG002760NIGMS NIH HHS P41 GM108538
6 · The paper itself

Abstract

Single-cell proteomics is a powerful approach to precisely profile protein landscapes within individual cells toward a comprehensive understanding of proteomic functions and tissue and cellular states. The inherent challenges associated with limited starting material demand heightened analytical sensitivity. Just as advances in sample preparation maximize the amount of material that makes it from the cell to the mass spectrometer, we strive to maximize the number of ions that make it from ion source to the detector. In isobaric tagging experiments, limited reporter ion generation limits quantitative accuracy and precision. The combination of infrared photoactivation and ion parking circumvents the

Indexed as

ProteomeProteomicsSingle-Cell AnalysisTandem Mass SpectrometryHumansInfrared RaysPeptidesPeptidesProteomeinfraredmass spectrometrymultiplexpeptide quantificationphotoactivationsingle-cell proteomicstandem mass tags

Identifiers

PMID38713017
PMCPMC12068060

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.