Evidence map›Paper›PMID 38722096›Full record

ArticleDevelopment (Cambridge, England)2024

Multiple cis-regulatory elements control prox1a expression in distinct lymphatic vascular beds.

Virginia Panara, Hujun Yu, Di Peng, Karin Staxäng, Monika Hodik, Beata Filipek-Gorniok, Jan Kazenwadel, Renae Skoczylas, Elizabeth Mason, Amin Allalou and 4 more

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Virginia PanaraDepartment of Immunology, Genetics and Pathology, Uppsala University, Uppsala 75185, Sweden.ORCID 0000-0002-8717-5190
Hujun YuOrganogenesis and Cancer Program, Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia.ORCID 0000-0003-3746-0695
Di PengDepartment of Immunology, Genetics and Pathology, Uppsala University, Uppsala 75185, Sweden.
Karin StaxängBioVis Core Facility, Platform EM, Uppsala University, Uppsala 75185, Sweden.
Monika HodikBioVis Core Facility, Platform EM, Uppsala University, Uppsala 75185, Sweden.
Beata Filipek-GorniokDepartment of Immunology, Genetics and Pathology, Uppsala University, Uppsala 75185, Sweden.ORCID 0000-0002-6757-5410
Jan KazenwadelCentre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia 5001, Australia.ORCID 0000-0001-6216-3444
Renae SkoczylasDepartment of Immunology, Genetics and Pathology, Uppsala University, Uppsala 75185, Sweden.ORCID 0000-0002-8570-7368
Elizabeth MasonOrganogenesis and Cancer Program, Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia.ORCID 0000-0002-8823-0024
Amin AllalouUppsala University, Department of Information Technology, Division of Visual Information and Interaction, and SciLifeLab BioImage Informatics Facility, Uppsala University, Uppsala 75185, Sweden.
Natasha L HarveyCentre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia 5001, Australia.ORCID 0000-0001-9839-8966
Tatjana HaitinaDepartment of Organismal Biology, Uppsala University, Uppsala 75236, Sweden.ORCID 0000-0002-8754-5534
Benjamin M HoganOrganogenesis and Cancer Program, Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia.ORCID 0000-0002-0651-7065
Katarzyna KoltowskaDepartment of Immunology, Genetics and Pathology, Uppsala University, Uppsala 75185, Sweden.ORCID 0000-0002-6841-8900

Funding

Kjell och Märta Beijers StiftelseKnut och Alice Wallenbergs Stiftelse 2017.0144National Health and Medical Research Council 1146706Ragnar Söderbergs stiftelse M13/17Vetenskapsrådet VR-MH-2016-01437
6 · The paper itself

Abstract

During embryonic development, lymphatic endothelial cell (LEC) precursors are distinguished from blood endothelial cells by the expression of Prospero-related homeobox 1 (Prox1), which is essential for lymphatic vasculature formation in mouse and zebrafish. Prox1 expression initiation precedes LEC sprouting and migration, serving as the marker of specified LECs. Despite its crucial role in lymphatic development, Prox1 upstream regulation in LECs remains to be uncovered. SOX18 and COUP-TFII are thought to regulate Prox1 in mice by binding its promoter region. However, the specific regulation of Prox1 expression in LECs remains to be studied in detail. Here, we used evolutionary conservation and chromatin accessibility to identify enhancers located in the proximity of zebrafish prox1a active in developing LECs. We confirmed the functional role of the identified sequences through CRISPR/Cas9 mutagenesis of a lymphatic valve enhancer. The deletion of this region results in impaired valve morphology and function. Overall, our results reveal an intricate control of prox1a expression through a collection of enhancers. Ray-finned fish-specific distal enhancers drive pan-lymphatic expression, whereas vertebrate-conserved proximal enhancers refine expression in functionally distinct subsets of lymphatic endothelium.

Indexed as

Endothelial CellsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHomeodomain ProteinsLymphatic VesselsTumor Suppressor ProteinsZebrafishZebrafish ProteinsAnimalsCRISPR-Cas SystemsLymphangiogenesisMicePromoter Regions, GeneticProspero-Related Homeobox 1 ProteinHomeodomain ProteinsProspero-Related Homeobox 1 ProteinTumor Suppressor ProteinsZebrafish ProteinsEnhancersEvolutionary conservationGene regulationLymphatic endothelial cellProx1Transcription factorZebrafish

Identifiers

PMID38722096
PMCPMC11128278

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.