Evidence map›Paper›PMID 38728591›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

Atom-Modified gDNA Enhances Cleavage Activity of TtAgo Enabling Ultra-Sensitive Nucleic Acid Testing.

Jun Zhang, Miaomiao Chen, Huan Jiang, Huifang Sun, Jianing Ren, Xin Yang, Shanshan Liu, Dongsheng Wang, Zhen Huang, Jianping Liu and 3 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jun ZhangDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Miaomiao ChenDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Huan JiangDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Huifang SunDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Jianing RenDepartment of Oncology & Department of Rheumatology and Immunology, Affiliated Hospital of North Sichuan Medical College, Nanchong, 637000, China.
Xin YangDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Shanshan LiuDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Dongsheng WangDepartment of Clinical Laboratory, Sichuan Cancer Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, 610041, China.
Zhen HuangKey Laboratory of Bio-Resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, 610064, China.
Jianping LiuDepartment of Oncology & Department of Rheumatology and Immunology, Affiliated Hospital of North Sichuan Medical College, Nanchong, 637000, China.
Daiyuan MaDepartment of Oncology & Department of Rheumatology and Immunology, Affiliated Hospital of North Sichuan Medical College, Nanchong, 637000, China.
Xiaolan GuoDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.
Guangcheng LuoDepartment of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College, School of Laboratory Medicine & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, China.ORCID 0000-0001-9928-4426

Funding

Industry-University-Research Innovation Fund for Chinese Universities 2023HT073Nanchong Science and Technology Fund 20SXQT0109Nanchong Science and Technology Fund 20SXZRKX0010Nanchong Science and Technology Fund 23JCYJPT0032Research Fund of Affiliated Hospital of North Sichuan Medical College 202001207Research Fund of Affiliated Hospital of North Sichuan Medical College 2023PTZK016Research Fund of Affiliated Hospital of North Sichuan Medical College ZX-51130001-2021-023Sichuan Health Commission 23LCYJ038Sichuan Medical Association S21077Sichuan Science and Technology Program 2022JDRC0129
6 · The paper itself

Abstract

The DNA-guided (gDNA) Argonaute from Thermus thermophilus (TtAgo) has little potential for nucleic acid detection and gene editing due to its poor dsDNA cleavage activity at relatively low temperature. Herein, the dsDNA cleavage activity of TtAgo is enhanced by using 2'-fluorine (2'F)-modified gDNA and developes a novel nucleic acid testing strategy. This study finds that the gDNA with 2'F-nucleotides at the 3'-end (2'F-gDNA) can promote the assembly of the TtAgo-guide-target ternary complex significantly by increasing its intermolecular force to target DNA and TtAgo, thereby providing ≈40-fold activity enhancement and decreasing minimum reaction temperature from 65 to 60 °C. Based on this outstanding advance, a novel nucleic acid testing strategy is proposed, termed FAST, which is performed by using the 2'F-gDNA/TtAgo for target recognition and combining it with Bst DNA polymerase for nucleic acid amplification. By integrating G-quadruplex and Thioflavin T, the FAST assay achieves one-pot real-time fluorescence analysis with ultra-sensitivity, providing a limit of detection up to 5 copies (20 µL reaction mixture) for miR-21 detection. In summary, an atom-modification-based strategy has been developed for enhancing the cleavage activity of TtAgo efficiently, thereby improving its practicability and establishing a TtAgo-based nucleic acid testing technology with ultra-sensitivity and high-specificity.

Indexed as

DNAThermus thermophilusArgonaute ProteinsFluorineNucleic AcidsArgonaute ProteinsDNAFluorineNucleic Acidschemically modified gDNAdsDNA cleavagefluorine modificationnucleic acid testingTtAgo

Identifiers

PMID38728591
PMCPMC11267260

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.