Evidence map›Paper›PMID 38735044›Full record

ArticleCell reports2024

CUX1 regulates human hematopoietic stem cell chromatin accessibility via the BAF complex.

Weihan Liu, Jeffrey L Kurkewich, Angela Stoddart, Saira Khan, Dhivyaa Anandan, Alexandre N Gaubil, Donald J Wolfgeher, Lia Jueng, Stephen J Kron, Megan E McNerney

Abstract read
In one paragraph

Article in Cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Weihan LiuDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA; Committee on Cancer Biology, The University of Chicago, Chicago, IL 60637, USA.
Jeffrey L KurkewichDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Angela StoddartDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Saira KhanDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Dhivyaa AnandanDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Alexandre N GaubilDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Donald J WolfgeherDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637, USA.
Lia JuengDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Stephen J KronThe University of Chicago Medicine Comprehensive Cancer Center, The University of Chicago, Chicago, IL 60637, USA; Committee on Cancer Biology, The University of Chicago, Chicago, IL 60637, USA; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637, USA.
Megan E McNerneyDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA; The University of Chicago Medicine Comprehensive Cancer Center, The University of Chicago, Chicago, IL 60637, USA; Committee on Cancer Biology, The University of Chicago, Chicago, IL 60637, USA; Department of Pediatrics, Section of Hematology/Oncology, The University of Chicago, Chicago, IL 60637, USA. Electronic address: megan.mcnerney@bsd.uchicago.edu.

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
Regulation of hematopoiesis by CUX1R01HL142782 · NHLBI · UNIVERSITY OF CHICAGO · PI MCNERNEY, MEGAN · 2018 to 2022
$2.0M
Establishing CUX1 as a determinant of hematopoietic stem cell fateR01HL166184 · NHLBI · UNIVERSITY OF CHICAGO · PI Megan McNerney · 2023 to 2026
$1.9M
The pathogenesis of chromosome 7q deletions in juvenile myelomonocytic leukemiaR01CA231880 · NCI · UNIVERSITY OF CHICAGO · PI MCNERNEY, MEGAN · 2018 to 2022
$1.8M
CUX1 pioneer factor activity is required to prevent myeloid leukemogenesisF32HL152524 · NHLBI · UNIVERSITY OF CHICAGO · PI KURKEWICH, JEFFREY LEE · 2020 to 2021
$101k
NCI NIH HHS P30 CA014599NCI NIH HHS R01 CA231880NHLBI NIH HHS F32 HL152524NHLBI NIH HHS R01 HL142782NHLBI NIH HHS R01 HL166184NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

CUX1 is a homeodomain-containing transcription factor that is essential for the development and differentiation of multiple tissues. CUX1 is recurrently mutated or deleted in cancer, particularly in myeloid malignancies. However, the mechanism by which CUX1 regulates gene expression and differentiation remains poorly understood, creating a barrier to understanding the tumor-suppressive functions of CUX1. Here, we demonstrate that CUX1 directs the BAF chromatin remodeling complex to DNA to increase chromatin accessibility in hematopoietic cells. CUX1 preferentially regulates lineage-specific enhancers, and CUX1 target genes are predictive of cell fate in vivo. These data indicate that CUX1 regulates hematopoietic lineage commitment and homeostasis via pioneer factor activity, and CUX1 deficiency disrupts these processes in stem and progenitor cells, facilitating transformation.

Indexed as

ChromatinHematopoietic Stem CellsHomeodomain ProteinsRepressor ProteinsAnimalsCell DifferentiationCell LineageChromatin Assembly and DisassemblyDNA-Binding ProteinsEnhancer Elements, GeneticHumansMiceNuclear ProteinsTranscription FactorsChromatinCUX1 protein, humanDNA-Binding ProteinsHomeodomain ProteinsNuclear ProteinsRepressor ProteinsTranscription FactorsBAF complexchromatin remodelerCP: Molecular biologyCP: Stem cell researchCUX1differentiationenhancerepigenetic regulationhematopoietic stem cellsmyeloid neoplasmspioneer factortranscription factor

Identifiers

PMID38735044
PMCPMC11163479

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.