Evidence map›Paper›PMID 38737413›Full record

ArticleFrontiers in microbiology2024

Comparing the molecular evolution and recombination patterns of predominant PRRSV-2 lineages co-circulating in China.

Riteng Zhang, Hui Li, Honglin Xie, Xiaolan Hou, Lixuan Zhou, Aiqiao Cao, Basit Zeshan, Yefei Zhou, Xinglong Wang

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Field Studies on theVeterinary sciences · 2026
    Article
  4. Article
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  6. Article
  7. Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Riteng Zhang *College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Hui Li *College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Honglin XieCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Xiaolan HouCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Lixuan ZhouCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Aiqiao CaoShenzhen Institute of Quality and Safety Inspection and Research, Shenzhen, Guangdong, China.
Basit ZeshanFaculty of Sustainable Agriculture, Universiti Malaysia Sabah, Sandakan, Sabah, Malaysia.
Yefei ZhouDepartment of Life Science, Nanjing Xiaozhuang University, Nanjing, Jiangsu, China.
Xinglong WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine reproductive and respiratory syndrome virus (PRRSV) poses widespread epidemics in swine herds, yet the drivers underlying lineage replacements/fitness dynamics remain unclear. To delineate the evolutionary trajectories of PRRSV-2 lineages prevalent in China, we performed a comprehensive longitudinal phylodynamic analysis of 822 viral sequences spanning 1991-2022. The objectives encompassed evaluating lineage dynamics, genetic diversity, recombination patterns and glycosylation profiles. A significant shift in the dominance of PRRSV-2 sub-lineages has been observed over the past 3 decades, transitioning from sub-lineage 8.7 to sub-lineage 1.8, followed by extensive diversification. The analysis revealed discordant recombination patterns between the two dominant viral sub-lineages 1.8 and 8.7, underscoring that modular genetic exchanges contribute significantly to their evolutionary shaping. Additionally, a strong association was found between recombination breakpoint locations and transcriptional regulatory sequences (TRSs). Glycosylation patterns also demonstrated considerable variability across sub-lineages and temporally, providing evidence for immune-driven viral evolution. Furthermore, we quantified different evolutionary rates across sub-lineages, with sub-lineage 1.8 uniquely displaying the highest nucleotide substitution rates. Taken together, these findings provide refined insight into the evolutionary mechanisms underpinning cyclic shifts in dominance among regionally circulating PRRSV sub-lineages.

Indexed as

Bayesianevolution dynamicsglycosylationPRRSVrecombination hotspots

Identifiers

PMID38737413
PMCPMC11088243

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.