Evidence map›Paper›PMID 38768348›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Inhibition of mRNA nuclear export promotes SARS-CoV-2 pathogenesis.

Menghan Mei, Anastasija Cupic, Lisa Miorin, Chengjin Ye, Tolga Cagatay, Ke Zhang, Komal Patel, Natalie Wilson, W Hayes McDonald, Nicholas A Crossland and 8 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. SARS-CoV-2 and MERS-CoV disrupt host protein synthesis via nsp1 with differential effects on the integrated stress response.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Review
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  12. Review
  13. Article
  14. SARS-CoV-2 Nsp1 traps RNA in the nucleus to escape immune detection.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Menghan Mei *Department of Biochemistry, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0000-0001-7130-4659
Anastasija Cupic *Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.ORCID 0000-0002-1291-1042
Lisa MiorinDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.ORCID 0000-0003-0989-3178
Chengjin YeTexas Biomedical Research Institute, San Antonio, TX 78227.ORCID 0000-0002-1934-9494
Tolga CagatayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0003-0256-7636
Ke ZhangDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Komal PatelDepartment of Biochemistry, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.
Natalie WilsonDepartment of Biochemistry, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0009-0000-1243-4429
W Hayes McDonaldDepartment of Biochemistry, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.
Nicholas A CrosslandComparative Pathology Laboratory, National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA 02215.ORCID 0000-0003-3873-9188
Ming LoComparative Pathology Laboratory, National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA 02215.ORCID 0000-0002-4280-3560
Magdalena RutkowskaDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Sadaf AslamDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.ORCID 0000-0002-3748-4227
Ignacio MenaDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.ORCID 0000-0001-5464-7086
Luis Martinez-SobridoTexas Biomedical Research Institute, San Antonio, TX 78227.ORCID 0000-0001-7084-0804
Yi RenDepartment of Biochemistry, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0000-0003-4531-0910
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.ORCID 0000-0002-6551-1827
Beatriz M A FontouraDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-8468-5315

Funding

Targeting druggable coronavirus proteinsU19AI171443 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SUMIT K CHANDA, Arnab Kumar Chatterjee · 2022 to 2026
$101.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Vulnerability of SARS- CoV-2 Infection in Lung Cancer Based on Serological Antibody AnalysesU54CA260560 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHYR, YU · 2020 to 2024
$10.0M
Mechanisms and Regulation of Nuclear mRNA ExportR35GM133743 · NIGMS · VANDERBILT UNIVERSITY · PI Yi Ren · 2019 to 2026
$3.6M
mRNA Nuclear Export Machinery as Target of SARS-CoV-2 Nsp1 ProteinR01AI184975 · NIAID · VANDERBILT UNIVERSITY · PI Beatriz MA Fontoura, Adolfo Garcia-Sastre · 2024 to 2026
$2.5M
Vectra Polaris Quantitative Pathology Imaging SystemS10OD030269 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CROSSLAND, NICHOLAS ALEXANDER · 2021 to 2021
$402k
Ventana Discovery Ultra Research Autostainer: an Ex+ Core serviceS10OD026983 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CROSSLAND, NICHOLAS ALEXANDER · 2019 to 2019
$207k
HHS | National Institutes of Health (NIH) #75N93021C00014HHS | National Institutes of Health (NIH) GM133743HHS | National Institutes of Health (NIH) S10-OD026983HHS | National Institutes of Health (NIH) S10OD030269HHS | National Institutes of Health (NIH) U19AI135972HHS | National Institutes of Health (NIH) U19AI171443HHS | NIH | National Cancer Institute (NCI) CA260560NCI NIH HHS P30 CA142543NCI NIH HHS U54 CA260560NIAID NIH HHS 75N93021C00014NIAID NIH HHS R01 AI184975NIAID NIH HHS U19 AI135972NIAID NIH HHS U19 AI171443NIGMS NIH HHS R35 GM133743NIH HHS S10 OD026983NIH HHS S10 OD030269
6 · The paper itself

Abstract

The nonstructural protein 1 (Nsp1) of SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) is a virulence factor that targets multiple cellular pathways to inhibit host gene expression and antiviral response. However, the underlying mechanisms of the various Nsp1-mediated functions and their contributions to SARS-CoV-2 virulence remain unclear. Among the targets of Nsp1 is the mRNA (messenger ribonucleic acid) export receptor NXF1-NXT1, which mediates nuclear export of mRNAs from the nucleus to the cytoplasm. Based on Nsp1 crystal structure, we generated mutants on Nsp1 surfaces and identified an acidic N-terminal patch that is critical for interaction with NXF1-NXT1. Photoactivatable Nsp1 probe reveals the RNA Recognition Motif (RRM) domain of NXF1 as an Nsp1 N-terminal binding site. By mutating the Nsp1 N-terminal acidic patch, we identified a separation-of-function mutant of Nsp1 that retains its translation inhibitory function but substantially loses its interaction with NXF1 and reverts Nsp1-mediated mRNA export inhibition. We then generated a recombinant (r)SARS-CoV-2 mutant on the Nsp1 N-terminal acidic patch and found that this surface is key to promote NXF1 binding and inhibition of host mRNA nuclear export, viral replication, and pathogenicity in vivo. Thus, these findings provide a mechanistic understanding of Nsp1-mediated mRNA export inhibition and establish the importance of this pathway in the virulence of SARS-CoV-2.

Indexed as

Active Transport, Cell NucleusCOVID-19Nucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, MessengerSARS-CoV-2Viral Nonstructural ProteinsAnimalsCell NucleusChlorocebus aethiopsHEK293 CellsHumansVero CellsVirulenceVirus ReplicationNucleocytoplasmic Transport ProteinsNXF1 protein, humanNXT1 protein, humanORF1ab polyprotein, SARS-CoV-2RNA-Binding ProteinsRNA, MessengerViral Nonstructural ProteinsmRNA exportNsp1nuclear transportNXF1SARS-CoV-2

Identifiers

PMID38768348
PMCPMC11145185

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.