Evidence map›Paper›PMID 38769103›Full record

ArticleNature communications2024

Sex-specific developmental gene expression atlas unveils dimorphic gene networks in C. elegans.

Rizwanul Haque, Sonu Peedikayil Kurien, Hagar Setty, Yehuda Salzberg, Gil Stelzer, Einav Litvak, Hila Gingold, Oded Rechavi, Meital Oren-Suissa

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. The PVD neuron has male-specific structure and mating function inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rizwanul HaqueDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-3968-6359
Sonu Peedikayil KurienDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
Hagar SettyDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-6857-4583
Yehuda SalzbergDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
Gil StelzerDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0001-9368-4912
Einav LitvakDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
Hila GingoldDepartment of Neurobiology, Wise Faculty of Life Sciences & Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Oded RechaviDepartment of Neurobiology, Wise Faculty of Life Sciences & Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Meital Oren-SuissaDepartment of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel. meital.oren@weizmann.ac.il.ORCID http://orcid.org/0000-0001-9937-8326

Funding

WormBase: a core data resource for C. elegans and other nematodesU41HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI KERSEY, PAUL, SCHEDL, TIM · 2013 to 2017
$20.5M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) ERC-2019-STG 850784Israel Science Foundation (ISF) 961/21NHGRI NIH HHS U41 HG002223NIH HHS P40 OD010440
6 · The paper itself

Abstract

Sex-specific traits and behaviors emerge during development by the acquisition of unique properties in the nervous system of each sex. However, the genetic events responsible for introducing these sex-specific features remain poorly understood. In this study, we create a comprehensive gene expression atlas of pure populations of hermaphrodites and males of the nematode Caenorhabditis elegans across development. We discover numerous differentially expressed genes, including neuronal gene families like transcription factors, neuropeptides, and G protein-coupled receptors. We identify INS-39, an insulin-like peptide, as a prominent male-biased gene expressed specifically in ciliated sensory neurons. We show that INS-39 serves as an early-stage male marker, facilitating the effective isolation of males in high-throughput experiments. Through complex and sex-specific regulation, ins-39 plays pleiotropic sexually dimorphic roles in various behaviors, while also playing a shared, dimorphic role in early life stress. This study offers a comparative sexual and developmental gene expression database for C. elegans. Furthermore, it highlights conserved genes that may underlie the sexually dimorphic manifestation of different human diseases.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsGene Expression Regulation, DevelopmentalGene Regulatory NetworksSex CharacteristicsAnimalsFemaleGene Expression ProfilingMaleNeuropeptidesSensory Receptor CellsTranscription FactorsCaenorhabditis elegans ProteinsNeuropeptidesTranscription Factors

Identifiers

PMID38769103
PMCPMC11106331

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.