Evidence map›Paper›PMID 38769321›Full record

ArticleNature communications2024

Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk.

Vivek Singh, Yuzuru Itoh, Samuel Del'Olio, Asem Hassan, Andreas Naschberger, Rasmus Kock Flygaard, Yuko Nobe, Keiichi Izumikawa, Shintaro Aibara, Juni Andréll and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. RiboScreenBiomedicines · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. CryoAtom improves model building for cryo-EM.Nature structural & molecular biology · 2026
    Article
  9. Review
  10. Structural Basis of TACO1-Mediated Efficient Mitochondrial Translation.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. The late stages of yeast mitoribosome large subunit biogenesis.Biochimica et biophysica acta. Molecular cell research · 2025
    Article
  13. The function of Mak16 in ribosome biogenesis depends on its [4Fe-4S] cluster.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Simulating biomolecules for physiological timescales.Current opinion in structural biology · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Vivek Singh *Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden.ORCID http://orcid.org/0000-0003-4656-3362
Yuzuru Itoh *Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden.ORCID http://orcid.org/0000-0001-7802-5572
Samuel Del'Olio *Department of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Asem Hassan *Department of Physics, Northeastern University, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0003-0220-195X
Andreas NaschbergerScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden.
Rasmus Kock FlygaardDepartment of Molecular Biology and Genetics, Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic EMBL Partnership for Molecular Medicine, Aarhus University, 8000, Aarhus C, Denmark.
Yuko NobeDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo, 192-0397, Japan.ORCID http://orcid.org/0000-0001-6375-983X
Keiichi IzumikawaDepartment of Molecular and Cellular Biochemistry, Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose-shi, Tokyo, 204-8588, Japan.
Shintaro AibaraScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden.ORCID http://orcid.org/0000-0003-2221-482X
Juni AndréllDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 17177, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2313-9155
Paul C WhitfordDepartment of Physics, Northeastern University, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0001-7104-2265
Antoni BarrientosDepartment of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.ORCID http://orcid.org/0000-0001-9018-3231
Masato TaokaDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo, 192-0397, Japan.ORCID http://orcid.org/0000-0001-5554-4951
Alexey AmuntsScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden. alexey.amunts@gmail.com.ORCID http://orcid.org/0000-0002-5302-1740

Funding

Mitochondrial Biogenesis in Health and DiseaseR35GM118141 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRIENTOS, ANTONI · 2016 to 2025
$8.9M
DH | NIHR | Health Services Research Programme (NIHR Health Services Research Programme) GM118141EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) ERC-2018-StG-805230Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2018.0080MEXT | Japan Science and Technology Agency (JST) 19198049NIGMS NIH HHS R35 GM118141Ragnar Söderbergs stiftelse (Ragnar Söderberg Foundation) M44/16Stiftelsen för Strategisk Forskning (Swedish Foundation for Strategic Research) FFL15:0325United States Department of Defense | Missile Defense Agency (MDA) MDA-381828
6 · The paper itself

Abstract

The mitoribosome translates mitochondrial mRNAs and regulates energy conversion that is a signature of aerobic life forms. We present a 2.2 Å resolution structure of human mitoribosome together with validated mitoribosomal RNA (rRNA) modifications, including aminoacylated CP-tRNA

Indexed as

Mitochondrial RibosomesRNA, TransferGuanosine DiphosphateHumansLigandsMitochondriaMolecular Dynamics SimulationPolyaminesProtein BindingRibosomal ProteinsRNA, MessengerRNA, RibosomalGuanosine DiphosphateLigandsPolyaminesRibosomal ProteinsRNA, MessengerRNA, RibosomalRNA, Transfer

Identifiers

PMID38769321
PMCPMC11106087

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.