Evidence map›Paper›PMID 38769334›Full record

ArticleNature communications2024

Development of a long noncoding RNA-based machine learning model to predict COVID-19 in-hospital mortality.

Yvan Devaux, Lu Zhang, Andrew I Lumley, Kanita Karaduzovic-Hadziabdic, Vincent Mooser, Simon Rousseau, Muhammad Shoaib, Venkata Satagopam, Muhamed Adilovic, Prashant Kumar Srivastava and 25 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Observational
  3. Article
  4. Review
  5. Article
  6. Article
  7. Prediction of COVID-19 severity using machine learning.Clinical and translational medicine · 2024
    Article
  8. Multiomic biomarkers after cardiac arrest.Intensive care medicine experimental · 2024
    Review
  9. Review
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Yvan DevauxCardiovascular Research Unit, Department of Precision Health, Luxembourg Institute of Health, Strassen, Luxembourg. yvan.devaux@lih.lu.ORCID http://orcid.org/0000-0002-5321-8543
Lu ZhangBioinformatics Platform, Luxembourg Institute of Health, Strassen, Luxembourg.
Andrew I LumleyCardiovascular Research Unit, Department of Precision Health, Luxembourg Institute of Health, Strassen, Luxembourg.ORCID http://orcid.org/0000-0001-5935-3327
Kanita Karaduzovic-HadziabdicFaculty of Engineering and Natural Sciences, International University of Sarajevo, Sarajevo, Bosnia and Herzegovina.
Vincent MooserDepartment of Human Genetics, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-8632-0448
Simon RousseauThe Meakins-Christie Laboratories at the Research Institute of the McGill University Heath Centre Research Institute, & Department of Medicine, Faculty of Medicine, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-8773-575X
Muhammad ShoaibLuxembourg Center for Systems Biomedicine, University of Luxembourg, Belval, Luxembourg.ORCID http://orcid.org/0000-0002-4854-4635
Venkata SatagopamLuxembourg Center for Systems Biomedicine, University of Luxembourg, Belval, Luxembourg.ORCID http://orcid.org/0000-0002-6532-5880
Muhamed AdilovicFaculty of Engineering and Natural Sciences, International University of Sarajevo, Sarajevo, Bosnia and Herzegovina.ORCID http://orcid.org/0000-0002-5326-0944
Prashant Kumar SrivastavaNational Heart and Lung Institute, Imperial College London, London, England, UK.
Costanza EmanueliNational Heart and Lung Institute, Imperial College London, London, England, UK.ORCID http://orcid.org/0000-0002-2392-0702
Fabio MartelliMolecular Cardiology Laboratory, IRCCS Policlinico San Donato, Milan, Italy.ORCID http://orcid.org/0000-0002-8624-7738
Simona GrecoMolecular Cardiology Laboratory, IRCCS Policlinico San Donato, Milan, Italy.
Lina BadimonCardiovascular Program-ICCC, Institut d'Investigació Biomèdica Sant Pau (IIB SANT PAU); CIBERCV, Autonomous University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-9162-2459
Teresa PadroCardiovascular Program-ICCC, Institut d'Investigació Biomèdica Sant Pau (IIB SANT PAU); CIBERCV, Autonomous University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0003-1921-954X
Mitja LustrekDepartment of Intelligent Systems, Jozef Stefan Institute, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0003-3219-2935
Markus ScholzGroup Genetical Statistics and Biomathematical Modelling, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.ORCID http://orcid.org/0000-0002-4059-1779
Maciej RosolowskiGroup Genetical Statistics and Biomathematical Modelling, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.
Marko JordanDepartment of Intelligent Systems, Jozef Stefan Institute, Ljubljana, Slovenia.
Timo BrandenburgerMedical University of Dusseldorf, Dusseldorf, Germany.
Bettina BenczikHUN-REN-SU System Pharmacology Research Group, Department of Pharmacology and Pharmacotherapy, Semmelweis University, Budapest, Hungary; Pharmahungary Group, Szeged, Hungary.ORCID http://orcid.org/0000-0003-0379-2181
Bence AggHUN-REN-SU System Pharmacology Research Group, Department of Pharmacology and Pharmacotherapy, Semmelweis University, Budapest, Hungary; Pharmahungary Group, Szeged, Hungary.ORCID http://orcid.org/0000-0002-6492-0426
Peter FerdinandyHUN-REN-SU System Pharmacology Research Group, Department of Pharmacology and Pharmacotherapy, Semmelweis University, Budapest, Hungary; Pharmahungary Group, Szeged, Hungary.
Jörg Janne VehreschildMedical Department 2 (Hematology/Oncology and Infectious Diseases), Center for Internal Medicine, Goethe University Frankfurt, University Hospital, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-5446-7170
Bettina Lorenz-DepiereuxInstitute of Epidemiology, Helmholtz Center Munich, Munich, Germany.
Marcus DörrDepartment of Internal Medicine B, University Medicine Greifswald, Greifswald, Germany; German Centre of Cardiovascular Research (DZHK), Greifswald, Germany.
Oliver WitzkeDepartment of Infectious Diseases, West German Centre of Infectious Diseases, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.
Gabriel SanchezFiralis SA, Huningue, France.
Seval KulFiralis SA, Huningue, France.
Andy H BakerCentre for Cardiovascular Science, The Queen's Medical Research Institute, University of Edinburgh, Edinburgh, Scotland.ORCID http://orcid.org/0000-0003-1441-5576
Guy FagherazziDeep Digital Phenotyping Research Unit, Department of Precision Health, Luxembourg Institute of Health, Strassen, Luxembourg.
Markus OllertDepartment of Infection and Immunity, Luxembourg Institute of Health, Esch-Sur-Alzette, Luxembourg.ORCID http://orcid.org/0000-0002-8055-0103
Ryan WereskiCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Nicholas L MillsCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-0533-7991
Hüseyin FiratFiralis SA, Huningue, France.

Funding

British Heart Foundation CH/11/2/28733British Heart Foundation CH/F/21/90010European Commission (EC) 101016072Fonds National de la Recherche Luxembourg (National Research Fund) C14/BM/8225223Fonds National de la Recherche Luxembourg (National Research Fund) C17/BM/11613033Fonds National de la Recherche Luxembourg (National Research Fund) COVID-19/2020-1/14719577/miRCOVID
6 · The paper itself

Abstract

Tools for predicting COVID-19 outcomes enable personalized healthcare, potentially easing the disease burden. This collaborative study by 15 institutions across Europe aimed to develop a machine learning model for predicting the risk of in-hospital mortality post-SARS-CoV-2 infection. Blood samples and clinical data from 1286 COVID-19 patients collected from 2020 to 2023 across four cohorts in Europe and Canada were analyzed, with 2906 long non-coding RNAs profiled using targeted sequencing. From a discovery cohort combining three European cohorts and 804 patients, age and the long non-coding RNA LEF1-AS1 were identified as predictive features, yielding an AUC of 0.83 (95% CI 0.82-0.84) and a balanced accuracy of 0.78 (95% CI 0.77-0.79) with a feedforward neural network classifier. Validation in an independent Canadian cohort of 482 patients showed consistent performance. Cox regression analysis indicated that higher levels of LEF1-AS1 correlated with reduced mortality risk (age-adjusted hazard ratio 0.54, 95% CI 0.40-0.74). Quantitative PCR validated LEF1-AS1's adaptability to be measured in hospital settings. Here, we demonstrate a promising predictive model for enhancing COVID-19 patient management.

Indexed as

COVID-19Hospital MortalityMachine LearningRNA, Long NoncodingSARS-CoV-2AdultAgedAged, 80 and overCanadaCohort StudiesEuropeFemaleHumansMaleMiddle AgedRNA, Long Noncoding

Identifiers

PMID38769334
PMCPMC11106268

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.