Evidence map›Paper›PMID 38783076›Full record

ArticleNature structural & molecular biology2024

TET activity safeguards pluripotency throughout embryonic dormancy.

Maximilian Stötzel, Chieh-Yu Cheng, Ibrahim A IIik, Abhishek Sampath Kumar, Persia Akbari Omgba, Vera A van der Weijden, Yufei Zhang, Martin Vingron, Alexander Meissner, Tuğçe Aktaş and 2 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Maximilian StötzelStem Cell Chromatin Lab, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Chieh-Yu ChengStem Cell Chromatin Lab, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Ibrahim A IIikOtto Warburg Laboratories, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Abhishek Sampath KumarInstitute of Chemistry and Biochemistry, Department of Biology, Chemistry and Pharmacy, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-7918-6706
Persia Akbari OmgbaStem Cell Chromatin Lab, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Vera A van der WeijdenStem Cell Chromatin Lab, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-6413-0045
Yufei ZhangDepartment of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Martin VingronDepartment of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-1765-4241
Alexander MeissnerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0001-8646-7469
Tuğçe AktaşOtto Warburg Laboratories, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0003-1599-9454
Helene KretzmerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-0723-4980
Aydan Bulut-KarslioğluStem Cell Chromatin Lab, Max Planck Institute for Molecular Genetics, Berlin, Germany. aydan.karslioglu@molgen.mpg.de.ORCID http://orcid.org/0000-0002-0413-9718

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dormancy is an essential biological process for the propagation of many life forms through generations and stressful conditions. Early embryos of many mammals are preservable for weeks to months within the uterus in a dormant state called diapause, which can be induced in vitro through mTOR inhibition. Cellular strategies that safeguard original cell identity within the silent genomic landscape of dormancy are not known. Here we show that the protection of cis-regulatory elements from silencing is key to maintaining pluripotency in the dormant state. We reveal a TET-transcription factor axis, in which TET-mediated DNA demethylation and recruitment of methylation-sensitive transcription factor TFE3 drive transcriptionally inert chromatin adaptations during dormancy transition. Perturbation of TET activity compromises pluripotency and survival of mouse embryos under dormancy, whereas its enhancement improves survival rates. Our results reveal an essential mechanism for propagating the cellular identity of dormant cells, with implications for regeneration and disease.

Indexed as

Proto-Oncogene ProteinsAnimalsChromatinDiapauseDioxygenasesDNA-Binding ProteinsDNA DemethylationDNA MethylationEmbryo, MammalianFemaleGene Expression Regulation, DevelopmentalMicePluripotent Stem CellsChromatinDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET1 protein, mouseTet2 protein, mouseTet3 protein, mouse

Identifiers

PMID38783076
PMCPMC11479945

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.