ArticlebioRxiv : the preprint server for biology2024
plantMASST - Community-driven chemotaxonomic digitization of plants.
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Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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88 authors.
Paulo Wender P GomesCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-5478-2448
Helena Mannochio-RussoCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-4961-2353
Robin SchmidCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0003-0922-3887
Simone ZuffaCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-7237-3402
Tito DamianiCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-4616-900X
Luis-Manuel Quiros-GuerreroInstitute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, 1211 Geneva, Switzerland.ORCID 0000-0002-1630-8697
Andrés Mauricio Caraballo-RodríguezCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-5499-2728
Haoqi Nina ZhaoCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0003-3908-630X
Heejung YangCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-5986-9024
Shipei XingCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-6227-6959
Vincent Charron-LamoureuxCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Desnor N ChigumbaDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-9785-5432
Brian E SedioDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
Jonathan A MyersDepartment of Biology, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0002-2058-8468
Pierre-Marie AllardDepartment of Biology, University of Fribourg, 1700 Fribourg, Switzerland.ORCID 0000-0003-3389-2191
Thomas V HarwoodThe DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, United States.ORCID 0009-0009-3236-0637
Giselle Tamayo-CastilloCentro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica, San José 11501-2060, Costa Rica.
Kyo Bin KangCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Sookmyung Women's University, Seoul, Republic of Korea.ORCID 0000-0003-3290-1017
Emmanuel DefossezInstitute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.ORCID 0000-0002-3279-9190
Hector H F KoolenUniversity of the State of Amazonas, Manaus, Brazil.ORCID 0000-0002-0181-348X
Milton Nascimento da SilvaLaboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.
Consuelo Yumiko Yoshioka E SilvaLaboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.
Sergio RasmannInstitute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
Tom W N WalkerInstitute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.ORCID 0000-0001-8095-6026
Gaëtan GlauserNeuchâtel Platform of Analytical Chemistry, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
José Miguel Chaves-FallasCentro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica, San José 11501-2060, Costa Rica.ORCID 0000-0001-9049-9383
Bruno DavidGreen Mission Pierre Fabre, Institut de Recherche Pierre Fabre, 3 Avenue Hubert Curien, BP 13562, 31562 Toulouse, France.ORCID 0000-0002-6222-9228
Hyunwoo KimCollege of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.ORCID 0000-0003-2473-8360
Kyu Hyeong LeeCollege of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.
Myeong Ji KimCollege of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.
Won Jun ChoiCollege of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.
Young-Sam KeumCollege of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.ORCID 0000-0002-9348-466X
Emilly J S P de LimaUniversity of the State of Amazonas, Manaus, Brazil.ORCID 0000-0001-9866-6342
Lívia Soman de MedeirosFederal University of São Paulo, Diadema, Brazil.ORCID 0000-0001-8743-3340
Giovana A BataglionFederal University of Amazonas, Manaus, Brazil.
Emmanoel V CostaFederal University of Amazonas, Manaus, Brazil.
Felipe M A da SilvaFederal University of Amazonas, Manaus, Brazil.ORCID 0000-0002-1809-1372
Alice Rhelly V CarvalhoLaboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.ORCID 0000-0003-1042-845X
José Diogo E ReisLaboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.ORCID 0000-0002-4709-4521
Sônia PamplonaLaboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.
Eunah JeongCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Sookmyung Women's University, Seoul, Republic of Korea.ORCID 0009-0008-0437-9210
Kyungha LeeCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Sookmyung Women's University, Seoul, Republic of Korea.
Geum Jin KimDepartment of Pharmacology, College of Medicine, Dongguk University, Gyeongju, Gyeongsangbuk-do, Republic of Korea.ORCID 0000-0001-8773-3853
Yun-Seo KilCollege of Pharmacy, Yeungnam University, Gyeongsan, Republic of Korea.
Joo-Won NamCollege of Pharmacy, Yeungnam University, Gyeongsan, Republic of Korea.ORCID 0000-0001-5502-0736
Hyukjae ChoiCollege of Pharmacy, Yeungnam University, Gyeongsan, Republic of Korea.ORCID 0000-0002-7707-4767
Yoo Kyong HanCollege of Pharmacy, Korea University, Sejong, Republic of Korea.
Si Young ParkCollege of Pharmacy, Korea University, Sejong, Republic of Korea.
Ki Yong LeeCollege of Pharmacy, Korea University, Sejong, Republic of Korea.ORCID 0000-0002-6191-4485
Changling HuLaboratory for Functional Foods and Human Health, Center for Excellence in Post-Harvest Technologies, North Carolina Agricultural and Technical State University, North Carolina Research Campus, Kannapolis, NC, USA.
Yilun DongLaboratory for Functional Foods and Human Health, Center for Excellence in Post-Harvest Technologies, North Carolina Agricultural and Technical State University, North Carolina Research Campus, Kannapolis, NC, USA.
Shengmin SangLaboratory for Functional Foods and Human Health, Center for Excellence in Post-Harvest Technologies, North Carolina Agricultural and Technical State University, North Carolina Research Campus, Kannapolis, NC, USA.
Colin R MorrisonDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.ORCID 0000-0003-2370-3617
Ricardo Moreira BorgesWalter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.ORCID 0000-0002-7662-6734
Andrew Magno TeixeiraWalter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Seo Yoon LeeSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Bum Soo LeeSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Se Yun JeongSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Ki Hyun KimSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Republic of Korea.ORCID 0000-0002-5285-9138
Adriano RutzInstitute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, 1211 Geneva, Switzerland.ORCID 0000-0003-0443-9902
Arnaud GaudryInstitute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, 1211 Geneva, Switzerland.ORCID 0000-0002-3648-7362
Edouard BruelhartDepartment of Biology, University of Fribourg, 1700 Fribourg, Switzerland.ORCID 0000-0003-3950-4065
Iris F KappersLaboratory of Plant Physiology, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0003-3349-3473
Rumyana KarlovaLaboratory of Plant Physiology, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0003-0230-6428
Mara MeisenburgLaboratory of Plant Physiology, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0002-3071-2872
Roland BerdaguerLaboratory of Plant Physiology, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.
J Sebastián TelloLatin America Department, Missouri Botanical Garden, St. Louis, MO, USA.ORCID 0000-0003-2539-6796
David HendersonDepartment of Biology, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0003-3523-0175
Leslie CayolaHerbario Nacional de Bolivia, Universidad Mayor de San Andrés, La Paz, Bolivia.
S Joseph WrightSmithsonian Tropical Research Institute, Balboa, Republic of Panama.ORCID 0000-0003-4260-5676
David N AllenDepartment of Biology, Middlebury College, Middlebury, VT, USA.ORCID 0000-0002-0712-9603
Kristina J Anderson-TeixeiraConservation Ecology Center, Smithsonian's National Zoo & Conservation Biology Institute, Front Royal, VA, USA.ORCID 0000-0001-8461-9713
Jennifer L BaltzerDepartment of Biology, Wilfrid Laurier University, Waterloo, ON, Canada.ORCID 0000-0001-7476-5928
James A LutzDepartment of Wildland Resources, Utah State University, Logan, UT, USA.ORCID 0000-0002-2560-0710
Sean M McMahonSmithsonian Environmental Research Center, Edgewater, MD, USA.
Geoffrey G ParkerForest Ecology Group, Smithsonian Environmental Research Center, Edgewater, MD, USA.
John D ParkerForest Ecology Group, Smithsonian Environmental Research Center, Edgewater, MD, USA.ORCID 0000-0002-3632-7625
Trent R NorthenEnvironmental Genomics and Systems Biology Division and the DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, United States.ORCID 0000-0001-8404-3259
Benjamin P BowenEnvironmental Genomics and Systems Biology Division and the DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, United States.ORCID 0000-0003-1368-3958
Tomáš PluskalInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-6940-3006
Justin J J van der HooftBioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-9340-5511
Jeremy J CarverCenter for Computational Mass Spectrometry, Department of Computer Science and Engineering, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego 92093-0404, United States.ORCID 0000-0003-0384-8130
Nuno BandeiraCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-8385-3655
Benjamin S PullmanCenter for Computational Mass Spectrometry, Department of Computer Science and Engineering, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego 92093-0404, United States.ORCID 0000-0002-2733-4911
Jean-Luc WolfenderInstitute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, 1211 Geneva, Switzerland.ORCID 0000-0002-0125-952X
Roland D KerstenDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-5811-7330
Mingxun WangDepartment of Computer Science, University of California Riverside, Riverside, CA, 92521, United States.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Funding
Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2MCollaborative Microbial Metabolite CenterU24DK133658 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PIETER C DORRESTEIN · 2022 to 2026
$2.9MGlobal proteomics mass spectrometry data sharing infrastructureR24GM148372 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Nuno Bandeira · 2023 to 2026
$2.8MBiomarkers of Dietary Flavonoid Intake, Carbonyl Stress, and Metabolic RiskR01DK131753 · NIDDK · NORTH CAROLINA AGRI & TECH ST UNIV · PI Shilpa Nandana Bhupathiraju, Shengmin Sang · 2022 to 2026
$2.6MNIDDK NIH HHS R01 DK131753NIDDK NIH HHS U24 DK133658NIGMS NIH HHS R01 GM107550NIGMS NIH HHS R24 GM148372
Abstract
Understanding the distribution of hundreds of thousands of plant metabolites across the plant kingdom presents a challenge. To address this, we curated publicly available LC-MS/MS data from 19,075 plant extracts and developed the plantMASST reference database encompassing 246 botanical families, 1,469 genera, and 2,793 species. This taxonomically focused database facilitates the exploration of plant-derived molecules using tandem mass spectrometry (MS/MS) spectra. This tool will aid in drug discovery, biosynthesis, (chemo)taxonomy, and the evolutionary ecology of herbivore interactions.
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