Evidence map›Paper›PMID 38808663›Full record

ArticleNucleic acids research2024

U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs.

Aykut Shen, Katarzyna Hencel, Matthew T Parker, Robyn Scott, Roberta Skukan, Aduragbemi S Adesina, Carey L Metheringham, Eric A Miska, Yunsun Nam, Wilfried Haerty and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Targeting intracellular mRNA mJournal of advanced research · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Structures and mechanisms of U6 snRNA mNature communications · 2025
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. medRxiv : the preprint server for health sciences · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Aykut ShenSchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.
Katarzyna HencelSchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.
Matthew T ParkerSchool of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
Robyn ScottDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Roberta SkukanSchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.
Aduragbemi S AdesinaSchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.
Carey L MetheringhamSchool of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
Eric A MiskaWellcome/CRUK Gurdon Institute, University of Cambridge, Tennis Court Rd, Cambridge CB2 1QN, UK.
Yunsun NamDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Wilfried HaertySchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.ORCID 0000-0003-0111-191X
Gordon G SimpsonSchool of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
Alper AkaySchool of Biological Sciences, University of East Anglia, NR4 7TJ Norwich, UK.ORCID 0000-0001-6825-4443

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Mechanisms of Microprocessor Function and RegulationR01GM122960 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI NAM, YUNSUN · 2017 to 2025
$3.2M
Small molecules to target the RNA methyltransferase complex METTL3/METTL14R01CA258589 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI NAM, YUNSUN · 2022 to 2025
$1.7M
Biotechnology and Biological Sciences Research CouncilMedical Research Council MR/P026028/1NCI NIH HHS R01 CA258589NIGMS NIH HHS R01 GM122960NIH HHS P40 OD010440Pew Scholar, and Southwestern Medical Foundation Scholar in Biomedical ResearchUK Research and Innovation BB/CCG1720/1UK Research and Innovation Biotechnology and Biological Sciences Research Council BB/CCG1720/1UK Research and Innovation Biotechnology and Biological Sciences Research Council Norwich Research Park Biosciences Doctoral Training Partnership BB/T008717/1UK Research and Innovation Future Leaders Fellowship MR/S033769/1UK Research and Innovation Medical Research Council MR/P026028/1UKRI bloc fundsUS National Institutes of Health R01GM122960Welch Foundation I-2115-20220331
6 · The paper itself

Abstract

pre-mRNA splicing is a critical feature of eukaryotic gene expression. Both cis- and trans-splicing rely on accurately recognising splice site sequences by spliceosomal U snRNAs and associated proteins. Spliceosomal snRNAs carry multiple RNA modifications with the potential to affect different stages of pre-mRNA splicing. Here, we show that the conserved U6 snRNA m6A methyltransferase METT-10 is required for accurate and efficient cis- and trans-splicing of C. elegans pre-mRNAs. The absence of METT-10 in C. elegans and METTL16 in humans primarily leads to alternative splicing at 5' splice sites with an adenosine at +4 position. In addition, METT-10 is required for splicing of weak 3' cis- and trans-splice sites. We identified a significant overlap between METT-10 and the conserved splicing factor SNRNP27K in regulating 5' splice sites with +4A. Finally, we show that editing endogenous 5' splice site +4A positions to +4U restores splicing to wild-type positions in a mett-10 mutant background, supporting a direct role for U6 snRNA m6A modification in 5' splice site recognition. We conclude that the U6 snRNA m6A modification is important for accurate and efficient pre-mRNA splicing.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsMethyltransferasesRNA PrecursorsRNA, Small NuclearRNA Splice SitesRNA SplicingAdenosineAlternative SplicingAnimalsHumansSpliceosomesAdenosineCaenorhabditis elegans ProteinsMethyltransferasesMETTL16 protein, humanRNA PrecursorsRNA, Small NuclearRNA Splice SitesU6 small nuclear RNA

Identifiers

PMID38808663
PMCPMC11347140

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.