Evidence map›Paper›PMID 38816579›Full record

ArticleCell death and differentiation2024

BRD9 regulates normal human hematopoietic stem cell function and lineage differentiation.

Swati Garg, Wei Ni, Basudev Chowdhury, Ellen L Weisberg, Martin Sattler, James D Griffin

Abstract read
In one paragraph

Article in Cell death and differentiation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Swati GargDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA.ORCID 0000-0002-3719-4342
Wei NiDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA.ORCID 0000-0002-5729-827X
Basudev ChowdhuryDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA.
Ellen L WeisbergDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA.ORCID 0000-0002-5679-9531
Martin SattlerDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA.ORCID 0000-0001-5053-4199
James D GriffinDana-Farber Cancer Institute, Dept. of Medical Oncology, Boston, MA, 02215, USA. james_griffin@dfci.harvard.edu.ORCID 0000-0003-1823-7930

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
NCI NIH HHS P01 CA066996
6 · The paper itself

Abstract

Bromodomain containing protein 9 (BRD9), a member of the non-canonical BRG1/BRM-associated factor (ncBAF) chromatin remodeling complex, has been implicated as a synthetic lethal target in AML but its function in normal human hematopoiesis is unknown. In hematopoietic stem and progenitor cells (HSPC) genomic or chemical inhibition of BRD9 led to a proliferative disadvantage and loss of stem cells in vitro. Human HSPCs with reduced BRD9 protein levels produced lower numbers of immature mixed multipotent GEMM colonies in semi-solid media. In lineage-promoting culture conditions, cells with reduced BRD9 levels failed to differentiate into the megakaryocytic lineage and showed delayed differentiation into erythroid cells but enhanced terminal myeloid differentiation. HSPCs with BRD9 knock down (KD) had reduced long-term multilineage engraftment in a xenotransplantation assay. An increased number of downregulated genes in RNAseq analysis after BRD9 KD coupled with a gain in chromatin accessibility at the promoters of several repressive transcription factors (TF) suggest that BRD9 functions in the maintenance of active transcription during HSC differentiation. In particular, the hematopoietic master regulator GATA1 was identified as one of the core TFs regulating the gene networks modulated by BRD9 loss in HSPCs. BRD9 inhibition reduced a GATA1-luciferase reporter signal, further suggesting a role for BRD9 in regulating GATA1 activity. BRD9 is therefore an additional example of epigenetic regulation of human hematopoiesis.

Indexed as

Cell DifferentiationCell LineageHematopoietic Stem CellsTranscription FactorsAnimalsBromodomain Containing ProteinsGATA1 Transcription FactorHematopoiesisHumansMiceBRD9 protein, humanBromodomain Containing ProteinsGATA1 protein, humanGATA1 Transcription FactorTranscription Factors

Identifiers

PMID38816579
PMCPMC11239944

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.