Evidence map›Paper›PMID 38821194›Full record

ReviewBiological psychiatry2024

Omics Approaches to Investigate the Pathogenesis of Suicide.

Maura Boldrini, Yang Xiao, Tarjinder Singh, Chenxu Zhu, Mbemba Jabbi, Harry Pantazopoulos, Gamze Gürsoy, Keri Martinowich, Giovanna Punzi, Eric J Vallender and 10 more

Erratum issuedAbstract readReview
In one paragraph

Review in Biological psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Maura BoldriniDepartment of Psychiatry, Columbia University, New York, New York; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York, New York. Electronic address: mb928@columbia.edu.
Yang XiaoDepartment of Biomedical Engineering, Columbia University, New York, New York.
Tarjinder SinghDepartment of Psychiatry, Columbia University, New York, New York; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York, New York; New York Genome Center, New York, New York.
Chenxu ZhuNew York Genome Center, New York, New York; Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine, New York, New York.
Mbemba JabbiDepartment of Psychiatry and Behavioral Sciences, Mulva Clinics for the Neurosciences, Dell Medical School, The University of Texas at Austin, Austin, Texas.
Harry PantazopoulosDepartment of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, Mississippi.
Gamze GürsoyNew York Genome Center, New York, New York; Departments of Biomedical Informatics and Computer Science, Columbia University, New York, New York.
Keri MartinowichLieber Institute for Brain Development, Department of Psychiatry and Behavioral Sciences, Baltimore, Maryland.
Giovanna PunziLieber Institute for Brain Development, Department of Psychiatry and Behavioral Sciences, Baltimore, Maryland.
Eric J VallenderDepartment of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, Mississippi.
Michael ZodyNew York Genome Center, New York, New York.
Sabina BerrettaDepartment of Psychiatry, Harvard Brain Tissue Resource Center, Harvard Medical School, McLean Hospital, Belmont, Massachusetts.
Thomas M HydeLieber Institute for Brain Development, Department of Psychiatry and Behavioral Sciences, Baltimore, Maryland.
Joel E KleinmanLieber Institute for Brain Development, Department of Psychiatry and Behavioral Sciences, Baltimore, Maryland.
Stefano MarencoHuman Brain Collection Core, National Institute of Mental Health's (NIMH) Division of Intramural Research Programs, Bethesda, Maryland.
Panagiotis RoussosCenter for Precision Medicine and Translational Therapeutics, Mental Illness Research Education, and Clinical Center (VISN 2 South), James J. Peters VA Medical Center, Bronx, New York.
David A LewisDepartments of Psychiatry and Neuroscience, University of Pittsburgh, Pittsburgh, Pennsylvania.
Gustavo TureckiDepartment of Psychiatry, Douglas Institute, McGill University, Montréal, Québec, Canada.
Thomas LehnerNew York Genome Center, New York, New York.
J John MannDepartment of Psychiatry, Columbia University, New York, New York; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York, New York.

Funding

Sex differences in operant cocaine memoriesP20GM144041 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI Ramona Moles · 2023 to 2026
$12.1M
Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer DiseaseR01AG067025 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FINKBEINER, STEVEN M, HAROUTUNIAN, VAHRAM · 2019 to 2023
$11.8M
Understanding the protective and neuroinflammatory role of human brain immune cells in Alzheimer DiseaseR01AG065582 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HAROUTUNIAN, VAHRAM, ROUSSOS, PANAGIOTIS · 2020 to 2024
$9.9M
A regulome and transcriptome atlas of fetal and adult human neurogenesisRF1MH128970 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CAI, LONG, HOF, PATRICK R · 2021 to 2021
$5.5M
Multiethnic genomic epigenomic and transcriptomic fine-mapping and functional validation analysis of schizophrenia and bipolar disorder risk lociR01MH125246 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROUSSOS, PANAGIOTIS · 2021 to 2025
$5.0M
New technologies to identify molecular regulators of the human hippocampus neurogenic niche in healthy aging and Alzheimer's DiseaseR01AG076949 · NIA · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI Maura Boldrini Dupont · 2022 to 2026
$4.4M
Comparison of normal aging with Alzheimer's Disease: cellular, synaptic, and vascular indices affecting brain plasticity and neurogenesisR01AG080790 · NIA · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI Maura Boldrini Dupont · 2023 to 2026
$2.9M
Human brain multi-omics to decipher major depression pathophysiologyRF1MH133561 · NIMH · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI DUPONT, MAURA BOLDRINI · 2025 to 2025
$2.3M
Diurnal Molecular Rhythms of the Human Hypothalamus and Involvement in Bipolar DisorderR01MH125833 · NIMH · UNIVERSITY OF MISSISSIPPI MED CTR · PI PANTAZOPOULOS, HARRY · 2021 to 2024
$1.6M
Human brain multi-omics to decipher major depression pathophysiologyR01MH133561 · NIMH · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI BOLDRINI, MAURA · 2023 to 2024
$1.6M
Brain network and cell-type elucidation of molecular dysregulations in bipolar disorder suicideR01MH134791 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI JABBI, MBEMBA, WALSS-BASS, CONSUELO · 2024 to 2024
$637k
2/2 Large-scale, single-cell characterization of molecular and cellular networks of mood regulation circuitry in major depressive disorderR56MH131818 · NIMH · CENTRE DE RECHERCHE DE L'HOPITAL DOUGLAS · PI TURECKI, GUSTAVO · 2023 to 2023
$505k
BLRD VA I01 BX004189NIAID NIH HHS R21 AI164769NIA NIH HHS R01 AG065582NIA NIH HHS R01 AG067025NIA NIH HHS R01 AG076949NIA NIH HHS R01 AG080790NIGMS NIH HHS P20 GM144041NIMH NIH HHS R01 MH125246NIMH NIH HHS R01 MH125833NIMH NIH HHS R01 MH133561NIMH NIH HHS R01 MH134791NIMH NIH HHS R56 MH131818NIMH NIH HHS RF1 MH128970NIMH NIH HHS RF1 MH133561
6 · The paper itself

Abstract

Suicide is the second leading cause of death in U.S. adolescents and young adults and is generally associated with a psychiatric disorder. Suicidal behavior has a complex etiology and pathogenesis. Moderate heritability suggests genetic causes. Associations between childhood and recent life adversity indicate contributions from epigenetic factors. Genomic contributions to suicide pathogenesis remain largely unknown. This article is based on a workshop held to design strategies to identify molecular drivers of suicide neurobiology that would be putative new treatment targets. The panel determined that while bulk tissue studies provide comprehensive information, single-nucleus approaches that identify cell type-specific changes are needed. While single-nuclei techniques lack information on cytoplasm, processes, spines, and synapses, spatial multiomic technologies on intact tissue detect cell alterations specific to brain tissue layers and subregions. Because suicide has genetic and environmental drivers, multiomic approaches that combine cell type-specific epigenome, transcriptome, and proteome provide a more complete picture of pathogenesis. To determine the direction of effect of suicide risk gene variants on RNA and protein expression and how these interact with epigenetic marks, single-nuclei and spatial multiomics quantitative trait loci maps should be integrated with whole-genome sequencing and genome-wide association databases. The workshop concluded with a recommendation for the formation of an international suicide biology consortium that will bring together brain banks and investigators with expertise in cutting-edge omics technologies to delineate the biology of suicide and identify novel potential treatment targets to be tested in cellular and animal models for drug and biomarker discovery to guide suicide prevention.

Indexed as

SuicideBrainEpigenesis, GeneticEpigenomicsGenome-Wide Association StudyGenomicsHumansHuman brainMultiomicsPostmortemSequencingSuicide

Identifiers

PMID38821194
PMCPMC11563882

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.