Evidence map›Paper›PMID 38848397›Full record

ArticlePloS one2024

Exploration of the shared pathways and common biomarker in adamantinomatous craniopharyngioma and type 2 diabetes using integrated bioinformatics analysis.

Yibo Han, Yong Wang, Shuo Li, Kohji Sato, Satoru Yamagishi

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Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Yibo HanDepartment of Organ and Tissue Anatomy, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Yong WangNeurosurgery, The First Hospital of China Medical University, Shenyang, China.
Shuo LiDepartment of Organ and Tissue Anatomy, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Kohji SatoDepartment of Organ and Tissue Anatomy, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Satoru YamagishiDepartment of Organ and Tissue Anatomy, Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID 0000-0002-8679-6956

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Craniopharyngiomas are rare tumors of the central nervous system that typically present with symptoms such as headache and visual impairment, and those reflecting endocrine abnormalities, which seriously affect the quality of life of patients. Patients with craniopharyngiomas are at higher cardiometabolic risk, defined as conditions favoring the development of type 2 diabetes and cardiovascular disease. However, the underlying common pathogenic mechanisms of craniopharyngiomas and type 2 diabetes are not clear. Especially due to the difficulty of conducting in vitro or in vivo experiments on craniopharyngioma, we thought the common pathway analysis between craniopharyngioma and type 2 diabetes based on bioinformatics is a powerful and feasible method. In the present study, using public datasets (GSE94349, GSE68015, GSE38642 and GSE41762) obtained from the GEO database, the gene expression associated with adamantinomatous craniopharyngioma, a subtype of craniopharyngioma, and type 2 diabetes were analyzed using a bioinformatic approach. We found 11 hub genes using a protein-protein interaction network analysis. Of these, seven (DKK1, MMP12, KRT14, PLAU, WNT5B, IKBKB, and FGF19) were also identified by least absolute shrinkage and selection operator analysis. Finally, single-gene validation and receptor operating characteristic analysis revealed that four of these genes (MMP12, PLAU, KRT14, and DKK1) may be involved in the common pathogenetic mechanism of adamantinomatous craniopharyngioma and type 2 diabetes. In addition, we have characterized the differences in immune cell infiltration that characterize these two diseases, providing a reference for further research.

Indexed as

Computational BiologyCraniopharyngiomaDiabetes Mellitus, Type 2Pituitary NeoplasmsBiomarkersBiomarkers, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansProtein Interaction MapsBiomarkersBiomarkers, Tumor

Identifiers

PMID38848397
PMCPMC11161051

What Socratic holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.