Evidence map›Paper›PMID 38866734›Full record

ArticleNature communications2024

Gel-assisted mass spectrometry imaging enables sub-micrometer spatial lipidomics.

Yat Ho Chan, Koralege C Pathmasiri, Dominick Pierre-Jacques, Maddison C Hibbard, Nannan Tao, Joshua L Fischer, Ethan Yang, Stephanie M Cologna, Ruixuan Gao

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Thousandfold Expansion Microscopy.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Review
  10. Review
  11. New Analytical Technologies to Resolve, Interpret, and Understand Lipid Complexity.Annual review of analytical chemistry (Palo Alto, Calif.) · 2026
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Laser Capture Microdissection for Quantitative Shotgun Lipidomics.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  17. Spatial Molecular Imaging of the Glycome Using Mass Spectrometry.Journal of visualized experiments : JoVE · 2025
    Article
  18. Article
  19. Review
  20. Mass Spectrometry Imaging.Analytical chemistry · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Yat Ho ChanDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0009-0009-7434-2429
Koralege C PathmasiriDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-2847-8551
Dominick Pierre-JacquesDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0009-0009-1272-0607
Maddison C HibbardDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0009-0002-9687-6295
Nannan TaoBruker Daltonics, Billerica, MA, USA.
Joshua L FischerBruker Daltonics, Billerica, MA, USA.
Ethan YangBruker Daltonics, Billerica, MA, USA.
Stephanie M ColognaDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-3541-3361
Ruixuan GaoDepartment of Chemistry, University of Illinois Chicago, Chicago, IL, USA. gaor@uic.edu.ORCID http://orcid.org/0000-0001-7137-2512

Funding

Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Briseis A Aschebrook-Kilfoy · 2017 to 2026
$13.6M
Functional and cell-type specific axonal pathways in the primate brainUG3MH126864 · NIMH · ALLEN INSTITUTE · PI REID, R CLAY · 2021 to 2023
$5.2M
Novel Therapeutic Approaches for NPC DiseaseR01NS124784 · NINDS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Vinay Aakalu, Stephanie M Cologna · 2022 to 2026
$2.9M
A biochemical approach towards subcellular, label-free molecular imagingDP2MH136390 · NIMH · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Ruixuan Gao · 2023 to 2026
$2.3M
Development of autophagy modulators for evaluation as a therapeutic strategy for Niemann-Pick Type CR01NS114413 · NINDS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI COLOGNA, STEPHANIE M · 2020 to 2024
$2.0M
Kinship Foundation Searle Scholars ProgramMcKnight Endowment Fund for Neuroscience McKnight Technological Innovations in Neuroscience AwardNational Science Foundation (NSF) CAREER Award 2143920NIEHS NIH HHS P30 ES027792NIMH NIH HHS DP2 MH136390NIMH NIH HHS UG3 MH126864NINDS NIH HHS R01 NS114413NINDS NIH HHS R01 NS124784UofI | University of Illinois at Chicago (UIC) Startup FundU.S. Department of Health & Human Services | National Institutes of Health (NIH) DP2MH136390U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS114413U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS124784U.S. Department of Health & Human Services | National Institutes of Health (NIH) UG3MH126864
6 · The paper itself

Abstract

A technique capable of label-free detection, mass spectrometry imaging (MSI) is a powerful tool for spatial investigation of native biomolecules in intact specimens. However, MSI has often been precluded from single-cell applications due to the spatial resolution limit set forth by the physical and instrumental constraints of the method. By taking advantage of the reversible interaction between the analytes and a superabsorbent hydrogel, we have developed a sample preparation and imaging workflow named Gel-Assisted Mass Spectrometry Imaging (GAMSI) to overcome the spatial resolution limits of modern mass spectrometers. With GAMSI, we show that the spatial resolution of MALDI-MSI can be enhanced ~3-6-fold to the sub-micrometer level without changing the existing mass spectrometry hardware or analysis pipeline. This approach will vastly enhance the accessibility of MSI-based spatial analysis at the cellular scale.

Indexed as

HydrogelsLipidomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAnimalsHumansLipidsMiceHydrogelsLipids

Identifiers

PMID38866734
PMCPMC11169460

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.